Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0647 ATGGATTGGGTTCGAGGTCAAGAGATTGGCCATGGAAGTTTCGCCACCATCAATTTAGCAATCCCTTCCCAGAGTTGCGGTGCTCTGTTTCCGCCATTAATGGCGGTTAAATCCTCTGAATCTCTCTGCTCTGCTTCTCTCAAGAACGAGAAGCGAATTCTGGATGATTTGGGCGATTGCCCACAAATTATTAGGTGTTTTGGGGAGGATTACAGCGTTGAGAAAGGCGAGGAGTTTTATAATTTGTTTCTGGAGTATGCCAGCGGTGGCAGTTTGGCCGACAGAATACAGAGCAGCGGCGGCTGCTTGCCGGAATTGGAGATCCGGCGGTTTACGAGGACGATTCTTGAAGGGCTTTCGTATATTCATGAAAAGGGATTTGTTCACTGCGATTTGAAGCCCGGGAATGTTCTTGTGTTTGGCGACGATGTTAAGATTGCTGATTTTGGATTGGCGAAAAAGGAGGGAAAAAACAGAGATGAAACAGGGAGGTTTCAATTGAGAGGCTCTCCTCTGTATATGTCGCCGGAATCGGTGAATGATAATGAGTATGAATCGCCGTGTGATATCTGGGCCGTTGGATGCGCGGTGGTGGAGATGTTTACCGGAAAACCGGGGTGGAGTTGCCGGCCGGAATCGAATATTTATTCTCTGTTGATTCGAATTGGGATCGGAGAGGAATTGCCGCAAATTCCTGCAGATCTTTCCGAGGAAGGGAAGGATTTTGTGGGTAAATGTTTGGTGAAAGATCCGGCGAAGAGATGGACGGCGGATATGCTATTAAACCACCCGTTTATGGCGGATTCGGGCGACTCTGTTTCATCGGCGGCGAAGGATGAGCCATCGACGTCGCCGAGATGCCCTTTTGATTTCGAAGATTGGGGTTCGGTTCAATCGCGAGGGTTCGGAGGGAGGGTTGAGGATAAACCGGAATGTTGGTCGGATTCGCTTTCTTCGACGGAGCGGCTGGTTCAGCTAGTGGGGAATGGGCCAGTTGATTGGTCCGTGACGGACAGTTGGGTCACCGTCAGATGA 1035 49.86 MDWVRGQEIGHGSFATINLAIPSQSCGALFPPLMAVKSSESLCSASLKNEKRILDDLGDCPQIIRCFGEDYSVEKGEEFYNLFLEYASGGSLADRIQSSGGCLPELEIRRFTRTILEGLSYIHEKGFVHCDLKPGNVLVFGDDVKIADFGLAKKEGKNRDETGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMFTGKPGWSCRPESNIYSLLIRIGIGEELPQIPADLSEEGKDFVGKCLVKDPAKRWTADMLLNHPFMADSGDSVSSAAKDEPSTSPRCPFDFEDWGSVQSRGFGGRVEDKPECWSDSLSSTERLVQLVGNGPVDWSVTDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4405625 4407012 + Sed0002998.1 Sed10g0647 727151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0647 344 Gene3D Transferase(Phosphotransferase) domain 1 94 288 - -
Sed10g0647 344 Pfam Protein kinase domain 5 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0647 344 SUPERFAMILY Protein kinase-like (PK-like) 3 287 IPR011009 -
Sed10g0647 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0647 344 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Sed10g0647 344 SMART serkin_6 3 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0647 344 ProSiteProfiles Protein kinase domain profile. 3 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0647 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524(InterPro)
Sed10g0647 344 CDD STKc_MAPKKK 2 265 - -
Sed10g0647 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 267 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0437 Sed-Chr1:3361123 Sed10g0647 Sed-Chr10:4405625 3.80E-104 dispersed
Sed09g1414 Sed-Chr9:38018301 Sed10g0647 Sed-Chr10:4405625 7.40E-55 dispersed
Sed09g1415 Sed-Chr9:38020916 Sed10g0647 Sed-Chr10:4405625 4.50E-57 dispersed
Sed10g0591 Sed-Chr10:3934828 Sed10g0647 Sed-Chr10:4405625 1.50E-55 dispersed
Sed10g0647 Sed-Chr10:4405625 Sed14g1340 Sed-Chr14:22237849 4.20E-58 dispersed
Sed10g0647 Sed-Chr10:4405625 Sed05g2032 Sed-Chr5:33553953 2.00E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79830 PF00069 Pkinase 6.40E-53 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0647 - - - 0.0