Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0650 ATGGCCGACCAGCTCTCCAACCAGACCTCCATTTTCGGCCTCCGCTTGTGGGTTGTTCTTGGGGTCTGTGTTGGCGCCGCCTTTGTGCTCTTCCTCTTCCTCATTTCCCTCTGGATTGCTGCCTCCAAACGCTCTCGCCGGAAGATTTCTCACCCACCCACAATCCCAATCGACTCCAAGGAGATTCAAGAGATCAGAATCGATCAAACCCAAGAACCCCACAAACCCACCAGGCCCCATTTTCAGGCCGACCCTCCTCCTGAACCGGACCCTATCCCTGGAATTGAGAGGCAGGCTTTGCTTTCCTTGCCTCAGGATGAGGAGCGCCTCAACAGGATTCATATTGATATCGGTAAGGATCATAGGATTATGTACCCCGAGCGCCTTGGCCGGTCCTCTTCCTCGCAGGGCAGCGGTGAGGGCCGATGCGGCACCGACCAGCTGCCGATGGTGGTTCCGGAAGTCTCGCATTTGGGTTGGGGCCATTGGTACACTCTTAGGGAGCTTGAAGCTTCCACGGATGGCTTTGCTCCTGATAATGTAATTGGTGAAGGTGGGTATGGAATTGTCTACCATGGCATATTGGAGGATGGAACCCAGGTTGCTGTTAAGAATTTGCTGAACAATAGGGGACAGGCCGAGAAGGAGTTTAAAGTAGAAGTTGAAGCAATTGGGAGAGTTAGACATAAGTGCTTGGTTAGATTGTTGGGATATTGTGCTGAAGGAGCTCATAGGATGCTTGTGTATGAGTACATTAATAATGGAAACTTGGAGCAATGGCTTCATGGGGATGTAGGATCTTTCAGCCCTCTTACATGGGAGATTAGGATGAATATCATTCTTGGAACCGCGAAAGGGCTAGCTTACCTTCACGAGGGGTTGGAACCGAAGGTCGTTCACCGGGATATCAAATCAAGCAATATCTTACTTGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTATTGTGCTCTGATAACAGCTACATTACAACCCGAGTCATGGGGACATTTGGCTATGTAGCGCCGGAATATGCAAGTACAGGCATGCTGAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTAGTCATGGAAATAATCTCAGGAAGGAACCCCGTCGATTATAGTCGTCCTCCAGACGAGGTGAATTTGATCGATTGGCTTAAGAGATTGGTCAGTAACCGAAATCCAGAGGGCATATTGGATCCAAAGCTCTCTGAAAAGCCTACTACAAGAGCATTAAAGCGGGCACTTCTTGTTGCATTGCGCTGTGTGGACCCGAATGCTCAGAAGCGGCCAAAAATGGGACATATTATTCATATGCTTGAAGCTGAAGAGGCTAACTTTAAAGGGGATCGCAAACCTGGAAAGGACCCAGAGATCTCACATTCAGACAATGGGAAGGATGGTTTAAATGAGAGGCATGCGACCGAATTAGGTGGCAACAATGAGGATGAACTCGGTACTCGACAATGA 1491 48.42 MADQLSNQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIAASKRSRRKISHPPTIPIDSKEIQEIRIDQTQEPHKPTRPHFQADPPPEPDPIPGIERQALLSLPQDEERLNRIHIDIGKDHRIMYPERLGRSSSSQGSGEGRCGTDQLPMVVPEVSHLGWGHWYTLRELEASTDGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKCLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRLVSNRNPEGILDPKLSEKPTTRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEANFKGDRKPGKDPEISHSDNGKDGLNERHATELGGNNEDELGTRQ 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4431141 4433876 - Sed0002161.1 Sed10g0650 727154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0650 496 Gene3D Phosphorylase Kinase; domain 1 156 251 - -
Sed10g0650 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0650 496 MobiDBLite consensus disorder prediction 452 486 - -
Sed10g0650 496 MobiDBLite consensus disorder prediction 452 496 - -
Sed10g0650 496 SUPERFAMILY Protein kinase-like (PK-like) 160 446 IPR011009 -
Sed10g0650 496 Pfam Protein kinase domain 180 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0650 496 ProSiteProfiles Protein kinase domain profile. 176 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0650 496 SMART serkin_6 176 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0650 496 FunFam Putative receptor-like serine/threonine-protein kinase 252 462 - -
Sed10g0650 496 Gene3D Transferase(Phosphotransferase) domain 1 252 460 - -
Sed10g0650 496 MobiDBLite consensus disorder prediction 70 95 - -
Sed10g0650 496 CDD STKc_IRAK 182 448 - -
Sed10g0650 496 PANTHER OS01G0323000 PROTEIN 3 470 IPR052232 -
Sed10g0650 496 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524(InterPro)
Sed10g0650 496 FunFam Probable serine/threonine-protein kinase At1g01540 156 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0650 Sed-Chr10:4431141 Sed12g0162 Sed-Chr12:927919 1.30E-161 dispersed
Sed13g2108 Sed-Chr13:25785078 Sed10g0650 Sed-Chr10:4431141 4.70E-49 dispersed
Sed10g0650 Sed-Chr10:4431141 Sed10g1235 Sed-Chr10:26440288 1.50E-194 wgd
Sed10g0650 Sed-Chr10:4431141 Sed11g0939 Sed-Chr11:23742419 6.80E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79831 PF00069 Pkinase 1.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0650 - - - 0.0