Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0651 ATGTGGGATCTGAACGATTGTCCTGATTGTAGGGAAGACGATGAATCAGAAGCTTGTTGTTCACCAAAGACATCCATGGATGAAGATGAGAAAGGGAAAAGAGTGGAATCCCTTTCGAATTCAAGCTCTTCCGCTCTGGTTATGGAGGATGGATCCGACGAGGTCATGCAAATTGACGCACCCCGTCCAGTCACTCACCAGTTTTTCCCACTCGAAGACTCCCCAATTGATGCTTCTGCCTTCCCTCCCGCTCACTGGGTCGGGGTCCAATTCCGACACCCCGACCCTCTGGCTGCACCCGCGGGTGCTGATTCCATCAGACCACCCGACCCCATCAAGAAGAGCCGCCGCGGACCCAGGTCCCGCAGCTCTCAGTACCGCGGCGTCACCTTCTACCGCAGAACCGGCCGCTGGGAATCTCATATTTGGGATTGTGGAAAGCAAGTTTATCTTGGTGGATTTGATACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGTATCGAGGATTACGAGGATGATTTAAAACAGATGGGAGGTTTAACCAAGGAGGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGATTTCCCAGAGGAAGCTCCAAGTATAGAGGCGTAACGCTTCATAAGTGTGGCAGATGGGAGGCTCGAATGGGTCAATTTCTTGGCAAAAAGTATGTTTATTTGGGTTTGTTTGATACGGAGGTTGATGCAGCAAGAGCTTATGATAAAGCTGCAATTAAGTGCAACGGCAAAGAAGCTGTCACTAATTTTGATCCCAGCATCTACGACAATGAGCTAAATCCGACCACTGATTCAACTGGGAATTTGGGGGATCATAGTCTTGATTTGAGTTTGGGGAATTCGAGCTCGAAGCAAAGCGACAGCCCGAATGCTTCCATAGATCCGCACCATTCTTCTTCAGCTAACTGGCAACAACGCAATCAAGGATTTAGGCCTCCTCAGCTAAATTTGGTGCAAGAATCAAGCGGAAATGGAACAAATAATTACAATGAACAGAGAAGAAATAACAGGCACTTGGAGAGTGAAACAATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCAAGTTCATTTGAATTGCAGAGACAAGGCCAATTCAATTATCAAGGAACACAAATAGGAAGTGATCTATCACTTTCATTAAGTGATGATAATCAAGTTCATGAATCTGGGTCATCTCAAATTCTTGCAAATGCTGCAGCATCATCAGGATTCTCACTCCAGATTTCACCAAATTCCCAAAATTGGCTGCACAACCATGCCATTCACTCTCATAGGAGACCCCCCTGA 1359 46.95 MWDLNDCPDCREDDESEACCSPKTSMDEDEKGKRVESLSNSSSSALVMEDGSDEVMQIDAPRPVTHQFFPLEDSPIDASAFPPAHWVGVQFRHPDPLAAPAGADSIRPPDPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGGLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVDAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTTDSTGNLGDHSLDLSLGNSSSKQSDSPNASIDPHHSSSANWQQRNQGFRPPQLNLVQESSGNGTNNYNEQRRNNRHLESETMQLLSQTHIQSPSSFELQRQGQFNYQGTQIGSDLSLSLSDDNQVHESGSSQILANAAASSGFSLQISPNSQNWLHNHAIHSHRRPP 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4456660 4459718 - Sed0014642.1 Sed10g0651 727155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0651 452 CDD AP2 125 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 SUPERFAMILY DNA-binding domain 216 276 IPR016177 GO:0003677(InterPro)
Sed10g0651 452 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 FunFam AP2-like ethylene-responsive transcription factor 124 183 - -
Sed10g0651 452 Pfam AP2 domain 216 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 Pfam AP2 domain 125 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 MobiDBLite consensus disorder prediction 273 331 - -
Sed10g0651 452 MobiDBLite consensus disorder prediction 276 331 - -
Sed10g0651 452 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 351 - -
Sed10g0651 452 MobiDBLite consensus disorder prediction 1 51 - -
Sed10g0651 452 ProSiteProfiles AP2/ERF domain profile. 125 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 MobiDBLite consensus disorder prediction 14 36 - -
Sed10g0651 452 CDD AP2 216 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 PRINTS Ethylene responsive element binding protein signature 256 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 MobiDBLite consensus disorder prediction 97 126 - -
Sed10g0651 452 FunFam AP2-like ethylene-responsive transcription factor 216 276 - -
Sed10g0651 452 Gene3D AP2/ERF domain 216 275 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677(InterPro)
Sed10g0651 452 SMART rav1_2 217 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0651 452 SMART rav1_2 125 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1992 Sed-Chr3:13831234 Sed10g0651 Sed-Chr10:4456660 4.40E-84 dispersed
Sed05g2900 Sed-Chr5:39971405 Sed10g0651 Sed-Chr10:4456660 5.60E-77 dispersed
Sed05g3461 Sed-Chr5:43466748 Sed10g0651 Sed-Chr10:4456660 2.50E-127 dispersed
Sed10g0651 Sed-Chr10:4456660 Sed14g0861 Sed-Chr14:17108621 7.30E-119 dispersed
Sed10g0651 Sed-Chr10:4456660 Sed10g0652 Sed-Chr10:4456660 3.90E-229 tandem
Sed10g0651 Sed-Chr10:4456660 Sed14g0860 Sed-Chr14:17108621 1.20E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39724 PF00847 AP2 4.10E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0651 K09284 - csv:101214724 592.038