Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0652 | ATGTGGGATCTGAACGATTGTCCTGATTGTAGGGAAGACGATGAATCAGAAGCTTGTTGTTCACCAAAGACATCCATGGATGAAGATGAGAAAGGGAAAAGAGTGGAATCCCTTTCGAATTCAAGCTCTTCCGCTCTGGTTATGGAGGATGGATCCGACGAGGTCATGCAAATTGACGCACCCCGTCCAGTCACTCACCAGTTTTTCCCACTCGAAGACTCCCCAATTGATGCTTCTGCCTTCCCTCCCGCTCACTGGGTCGGGGTCCAATTCCGACACCCCGACCCTCTGGCTGCACCCGCGGGTGCTGATTCCATCAGACCACCCGACCCCATCAAGAAGAGCCGCCGCGGACCCAGGTCCCGCAGCTCTCAGTACCGCGGCGTCACCTTCTACCGCAGAACCGGCCGCTGGGAATCTCATATTTGGGATTGTGGAAAGCAAGTTTATCTTGGTGGATTTGATACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGTATCGAGGATTACGAGGATGATTTAAAACAGATGGGAGGTTTAACCAAGGAGGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGATTTCCCAGAGGAAGCTCCAAGTATAGAGGCGTAACGCTTCATAAGTGTGGCAGATGGGAGGCTCGAATGGGTCAATTTCTTGGCAAAAAGTATGTTTATTTGGGTTTGTTTGATACGGAGGTTGATGCAGCAAGAGCTTATGATAAAGCTGCAATTAAGTGCAACGGCAAAGAAGCTGTCACTAATTTTGATCCCAGCATCTACGACAATGAGCTAAATCCGACCACTGATTCAACTGGGAATTTGGGGGATCATAGTCTTGATTTGAGTTTGGGGAATTCGAGCTCGAAGCAAAGCGACAGCCCGAATGCTTCCATAGATCCGCACCATTCTTCTTCAGCTAACTGGCAACAACGCAATCAAGGATTTAGGCCTCCTCAGCTAAATTTGGTGCAAGAATCAAGCGGAAATGGAACAAATAATTACAATGAACAGAGAAGAAATAACAGGCACTTGGAGAGTGAAACAATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCAAGTTCATTTGAATTGCAGAGACAAGGCCAATTCAATTATCAAGTAACTATATATTTTGTATATTAA | 1200 | 47.08 | MWDLNDCPDCREDDESEACCSPKTSMDEDEKGKRVESLSNSSSSALVMEDGSDEVMQIDAPRPVTHQFFPLEDSPIDASAFPPAHWVGVQFRHPDPLAAPAGADSIRPPDPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGGLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVDAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTTDSTGNLGDHSLDLSLGNSSSKQSDSPNASIDPHHSSSANWQQRNQGFRPPQLNLVQESSGNGTNNYNEQRRNNRHLESETMQLLSQTHIQSPSSFELQRQGQFNYQVTIYFVY | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4456660 | 4459718 | - | Sed0014642.2 | Sed10g0652 | 727156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0652 | 399 | SUPERFAMILY | DNA-binding domain | 124 | 182 | IPR016177 | GO:0003677(InterPro) | |
Sed10g0652 | 399 | CDD | AP2 | 125 | 180 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | ProSiteProfiles | AP2/ERF domain profile. | 217 | 274 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | PRINTS | Ethylene responsive element binding protein signature | 218 | 229 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | PRINTS | Ethylene responsive element binding protein signature | 256 | 276 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | MobiDBLite | consensus disorder prediction | 273 | 331 | - | - | |
Sed10g0652 | 399 | MobiDBLite | consensus disorder prediction | 276 | 331 | - | - | |
Sed10g0652 | 399 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Sed10g0652 | 399 | FunFam | AP2-like ethylene-responsive transcription factor | 216 | 276 | - | - | |
Sed10g0652 | 399 | ProSiteProfiles | AP2/ERF domain profile. | 125 | 181 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | MobiDBLite | consensus disorder prediction | 14 | 36 | - | - | |
Sed10g0652 | 399 | CDD | AP2 | 216 | 276 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | FunFam | AP2-like ethylene-responsive transcription factor | 124 | 183 | - | - | |
Sed10g0652 | 399 | MobiDBLite | consensus disorder prediction | 97 | 126 | - | - | |
Sed10g0652 | 399 | Gene3D | AP2/ERF domain | 124 | 183 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | Gene3D | AP2/ERF domain | 216 | 275 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 54 | 342 | - | - | |
Sed10g0652 | 399 | SUPERFAMILY | DNA-binding domain | 216 | 276 | IPR016177 | GO:0003677(InterPro) | |
Sed10g0652 | 399 | Pfam | AP2 domain | 125 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | Pfam | AP2 domain | 216 | 266 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | SMART | rav1_2 | 217 | 280 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0652 | 399 | SMART | rav1_2 | 125 | 187 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0652 | Sed-Chr10:4456660 | Sed14g0860 | Sed-Chr14:17108621 | 1.80E-158 | dispersed | |
Sed10g0651 | Sed-Chr10:4456660 | Sed10g0652 | Sed-Chr10:4456660 | 3.90E-229 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39725 | PF00847 | AP2 | 3.50E-09 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0652 | K09284 | - | csv:101214724 | 554.673 |