Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0653 ATGAAGATTCAGATTTCGGATTCCACGGCCGTGGACGGCGGCGCCGGAAAGAGAGGGGCCCAGAGTCAGCGGCCCTACAAAGGGATACGGATGAGGAAATGGGGGAAATGGGTGGCGGAGATTCGCGAGCCGATTAAGCGGTCCAGGATTTGGCTCGGCTCTTACTCTTCCCCCGTCGCCGCCGCCAGAGCCTACGACACCGCCGTCTTCTACCTCAGAGGCCCCTCCGCCAGGCTCAATTTTCCAGACCTGTTGCCCCATGTCGGCGGCGGCGGCGGCGACATGTCGGCGGCTTCGATTCGGAAGAAAGCGACGGAGGTTGGGGCCAGAGTGGATGCTTTCGAGGCCTCCTTGGGCCGCCGTCTTCCTCACTCGGCGCCGTCTCCGCCGCGGGTTAATGGGCGCGGCGGGTTTTTGTGTCGGGTCGATTTGAATAAATTGCCCGACCCGGAAGATGAACCCGATGGGGGATTTTCTGTCGTTGAGAAGCTTACACGCGCCGCCGAGGTACGTGACTGCTCATGA 525 61.71 MKIQISDSTAVDGGAGKRGAQSQRPYKGIRMRKWGKWVAEIREPIKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPDLLPHVGGGGGDMSAASIRKKATEVGARVDAFEASLGRRLPHSAPSPPRVNGRGGFLCRVDLNKLPDPEDEPDGGFSVVEKLTRAAEVRDCS 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4487343 4488300 - Sed0022243.1 Sed10g0653 727157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0653 174 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Sed10g0653 174 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 CDD AP2 26 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677(InterPro)
Sed10g0653 174 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 153 - -
Sed10g0653 174 Pfam AP2 domain 26 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0653 174 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0653 Sed-Chr10:4487343 Sed13g1932 Sed-Chr13:24194781 1.10E-19 dispersed
Sed01g2682 Sed-Chr1:21493109 Sed10g0653 Sed-Chr10:4487343 2.30E-36 wgd
Sed10g0653 Sed-Chr10:4487343 Sed11g0932 Sed-Chr11:23467725 1.30E-36 wgd
Sed10g0653 Sed-Chr10:4487343 Sed13g1770 Sed-Chr13:22730158 1.30E-39 wgd
Sed10g0653 Sed-Chr10:4487343 Sed14g0864 Sed-Chr14:17345118 5.40E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39726 PF00847 AP2 1.40E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0653 K09286 - csv:101214481 207.608