Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0657 | ATGGCCGTGGATTTCATGCCCAACCCCTCCACCCAAAACATGGAACCAAACGCCGTCCAAGAAGCCGCCTCCGGCCTCGAAAGCGTCCAAAAACTCATCCAACTACTCTCCCCCAATCACCCGGACTCCGCCGCCGATTTCCCCACCGACTGCCGCGCCGCCGCCGACGCCGCCGTCTCCAAGTTCAGAAAGGTCATTTCCCTCCTGGGCCGGACCCGGGTCGGCCACGCCCGCTTCCGCCGAGCTCCCCTGCCTCTCCCACAAGTCCACGCCGCCACTCCCATCCAGCAGATCCCGTCTCACCCCATCTCCACCAGCGTCAACTTCTCCTCCTTGACCGGCGACGCCGACGGCGATGCCAAACGCCCTCCGTCGTCCTCGGCCCCGCCGTTTCAGATATCCAATCTTTCCCAAGTCTCCTCCGCCGGAAAACCGCCGCTTAAGAGGAAGTGTGGCTCCGATGACTTGGGATCCGGCAAGTGTAGCGCCGCTTCTTCCTCCGGCCGGTGTAATTGCTCCAAGAAAAGAAAACACAGGGTGAAGAGAGTTGTGAGGGTGCCGGCGGTGAGCTTGAAAACGGCGGATATCCCACCCGACGATTATTCATGGAGAAAATATGGTCAAAAGCCCATTAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCAATGTTAGTGGTTACTTACGAAGGAGAACATAACCACACACTCACTGTATCCGAAGCGTCCAGTCTCATCCTCGAGTCTTCTTAG | 813 | 58.55 | MAVDFMPNPSTQNMEPNAVQEAASGLESVQKLIQLLSPNHPDSAADFPTDCRAAADAAVSKFRKVISLLGRTRVGHARFRRAPLPLPQVHAATPIQQIPSHPISTSVNFSSLTGDADGDAKRPPSSSAPPFQISNLSQVSSAGKPPLKRKCGSDDLGSGKCSAASSSGRCNCSKKRKHRVKRVVRVPAVSLKTADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLTVSEASSLILESS | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4510509 | 4513134 | - | Sed0011446.1 | Sed10g0657 | 727161 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0657 | 270 | MobiDBLite | consensus disorder prediction | 93 | 113 | - | - | |
Sed10g0657 | 270 | Pfam | WRKY DNA -binding domain | 199 | 255 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0657 | 270 | Pfam | Plant zinc cluster domain | 148 | 195 | IPR018872 | - | |
Sed10g0657 | 270 | FunFam | WRKY transcription factor 65 | 181 | 258 | - | - | |
Sed10g0657 | 270 | Gene3D | WRKY domain | 183 | 258 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0657 | 270 | ProSiteProfiles | WRKY domain profile. | 192 | 258 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0657 | 270 | SMART | WRKY_cls | 197 | 257 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed10g0657 | 270 | MobiDBLite | consensus disorder prediction | 127 | 142 | - | - | |
Sed10g0657 | 270 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 19 | 260 | IPR044810 | GO:0003700(InterPro) | |
Sed10g0657 | 270 | MobiDBLite | consensus disorder prediction | 93 | 168 | - | - | |
Sed10g0657 | 270 | SUPERFAMILY | WRKY DNA-binding domain | 192 | 256 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0470 | Sed-Chr7:3544016 | Sed10g0657 | Sed-Chr10:4510509 | 1.40E-37 | dispersed | |
Sed10g0657 | Sed-Chr10:4510509 | Sed13g2093 | Sed-Chr13:25655946 | 1.10E-58 | dispersed | |
Sed01g0412 | Sed-Chr1:3116447 | Sed10g0657 | Sed-Chr10:4510509 | 1.40E-72 | transposed | |
Sed01g2685 | Sed-Chr1:21514376 | Sed10g0657 | Sed-Chr10:4510509 | 2.60E-65 | wgd | |
Sed10g0657 | Sed-Chr10:4510509 | Sed13g1775 | Sed-Chr13:22795985 | 1.10E-66 | wgd | |
Sed10g0657 | Sed-Chr10:4510509 | Sed14g0865 | Sed-Chr14:17452343 | 2.70E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39727 | PF03106 | WRKY | 3.10E-26 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0657 | - | - | - | 0.0 |