Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0657 ATGGCCGTGGATTTCATGCCCAACCCCTCCACCCAAAACATGGAACCAAACGCCGTCCAAGAAGCCGCCTCCGGCCTCGAAAGCGTCCAAAAACTCATCCAACTACTCTCCCCCAATCACCCGGACTCCGCCGCCGATTTCCCCACCGACTGCCGCGCCGCCGCCGACGCCGCCGTCTCCAAGTTCAGAAAGGTCATTTCCCTCCTGGGCCGGACCCGGGTCGGCCACGCCCGCTTCCGCCGAGCTCCCCTGCCTCTCCCACAAGTCCACGCCGCCACTCCCATCCAGCAGATCCCGTCTCACCCCATCTCCACCAGCGTCAACTTCTCCTCCTTGACCGGCGACGCCGACGGCGATGCCAAACGCCCTCCGTCGTCCTCGGCCCCGCCGTTTCAGATATCCAATCTTTCCCAAGTCTCCTCCGCCGGAAAACCGCCGCTTAAGAGGAAGTGTGGCTCCGATGACTTGGGATCCGGCAAGTGTAGCGCCGCTTCTTCCTCCGGCCGGTGTAATTGCTCCAAGAAAAGAAAACACAGGGTGAAGAGAGTTGTGAGGGTGCCGGCGGTGAGCTTGAAAACGGCGGATATCCCACCCGACGATTATTCATGGAGAAAATATGGTCAAAAGCCCATTAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGCGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCAATGTTAGTGGTTACTTACGAAGGAGAACATAACCACACACTCACTGTATCCGAAGCGTCCAGTCTCATCCTCGAGTCTTCTTAG 813 58.55 MAVDFMPNPSTQNMEPNAVQEAASGLESVQKLIQLLSPNHPDSAADFPTDCRAAADAAVSKFRKVISLLGRTRVGHARFRRAPLPLPQVHAATPIQQIPSHPISTSVNFSSLTGDADGDAKRPPSSSAPPFQISNLSQVSSAGKPPLKRKCGSDDLGSGKCSAASSSGRCNCSKKRKHRVKRVVRVPAVSLKTADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLTVSEASSLILESS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4510509 4513134 - Sed0011446.1 Sed10g0657 727161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0657 270 MobiDBLite consensus disorder prediction 93 113 - -
Sed10g0657 270 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0657 270 Pfam Plant zinc cluster domain 148 195 IPR018872 -
Sed10g0657 270 FunFam WRKY transcription factor 65 181 258 - -
Sed10g0657 270 Gene3D WRKY domain 183 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0657 270 ProSiteProfiles WRKY domain profile. 192 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0657 270 SMART WRKY_cls 197 257 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0657 270 MobiDBLite consensus disorder prediction 127 142 - -
Sed10g0657 270 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 260 IPR044810 GO:0003700(InterPro)
Sed10g0657 270 MobiDBLite consensus disorder prediction 93 168 - -
Sed10g0657 270 SUPERFAMILY WRKY DNA-binding domain 192 256 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0470 Sed-Chr7:3544016 Sed10g0657 Sed-Chr10:4510509 1.40E-37 dispersed
Sed10g0657 Sed-Chr10:4510509 Sed13g2093 Sed-Chr13:25655946 1.10E-58 dispersed
Sed01g0412 Sed-Chr1:3116447 Sed10g0657 Sed-Chr10:4510509 1.40E-72 transposed
Sed01g2685 Sed-Chr1:21514376 Sed10g0657 Sed-Chr10:4510509 2.60E-65 wgd
Sed10g0657 Sed-Chr10:4510509 Sed13g1775 Sed-Chr13:22795985 1.10E-66 wgd
Sed10g0657 Sed-Chr10:4510509 Sed14g0865 Sed-Chr14:17452343 2.70E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39727 PF03106 WRKY 3.10E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0657 - - - 0.0