Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0664 ATGGATGATGGAACTTCTAGTCGTTCAACACAATCTCCAGTCGACAATCCAGCTCCAACAGTTCATAGGCAAAATAGTAAAGGAGACAATTTGACATCCATTTTATCTACGTCTGGAATATCTTCTTGGGCTAAGAGTTTTAGAAATCCACAACCATCTGAAGCAGCAGAAAATGACCCTAAGGCAGAAAATACTGGGATGTCAGCAATTGCTCGTTTCGGTAGCGGGTTTGGATTGCGGATACCTTCAATGTCTTCTGTAAGAGACGATGGTGTTGCAGATGCGAAATCAGCAACACAATCCGGTGTTTTCGAATCACTGACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAAGCTATGCAGGTAAAGGCTCGCCATATTGTATCTCAGAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATTCCTTGAAGGATTTTACAGAAATCATATGGTAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTGTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGCCAAAGTGCATATGCATGGTTGAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCGAGAACTGGGCTAATGATTTGCAGCCTTCTTTTATTTCTAAAGTTCTTCCAAACATCAGCAGAGGCAATTGACTATTACAATAAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAATATTTTGATCGCATTTTAACACATTTCAACGGAAATTCTCCACCTGGACGAAGGTGCATGCTGAGAGGTTTTCGGCTTCATAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAATCATAGTGAGGTTTTGTTCTCAACAAAAAATCATCCAAAGACTAAGGTTTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTAACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCATGACCGACATGGAGATTTTTATTGTTGGCTAAATACAACAATGACTGAAAACAAAGTGTTATTAAGTGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCAACTCCTGGATTCCAGGTCGAAGTTGTGATGATAGACTATAATGGTACCTTGCCAACACGATTGAAAACTGATTCTGCTGGCAAAGGATCTGATCATCGCTCAATTCACGGTCAGGCATCAGGTCATGAAGCCGCACAGACCAGCGAAAACAAAACTCACGATGTCGAAGAAAACGACGATGATGTATTCTCTGATAGTGATGAAGAAAATGGTGGCACAAAACCAAGTCTAGCTCAATCAACTTCCGGAGCTGCAAAAGCTGACCATTCATCAACAGCAATTGCTTCTGAAATAATTGGGAGTTTGGCACATGAAACTAGTAATTTGTCACTCGGGAATGAGAAAAACCTACAAATTAATGCTCCAAAAGAAGCAAACTTTGATGGCATGACACAACCGTCAGGCCTTGAGACCCCTAATTTGGGTTCAGTAAGTGCAAGCGATTTCAAGGCAATAGCAGCTGATGCGTCAGTTTTTACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1818 40.04 MDDGTSSRSTQSPVDNPAPTVHRQNSKGDNLTSILSTSGISSWAKSFRNPQPSEAAENDPKAENTGMSAIARFGSGFGLRIPSMSSVRDDGVADAKSATQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMVEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNKKRCVDGKALVLPSQIRYVKYFDRILTHFNGNSPPGRRCMLRGFRLHKCPYWVRPSITISNHSEVLFSTKNHPKTKVLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYNGTLPTRLKTDSAGKGSDHRSIHGQASGHEAAQTSENKTHDVEENDDDVFSDSDEENGGTKPSLAQSTSGAAKADHSSTAIASEIIGSLAHETSNLSLGNEKNLQINAPKEANFDGMTQPSGLETPNLGSVSASDFKAIAADASVFTFGDEEDFDSE 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4563138 4568532 + Sed0008612.2 Sed10g0664 727168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0664 605 MobiDBLite consensus disorder prediction 1 53 - -
Sed10g0664 605 MobiDBLite consensus disorder prediction 1 63 - -
Sed10g0664 605 MobiDBLite consensus disorder prediction 504 524 - -
Sed10g0664 605 SMART PTEN_C2_2 319 447 IPR014020 -
Sed10g0664 605 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Sed10g0664 605 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Sed10g0664 605 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Sed10g0664 605 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Sed10g0664 605 MobiDBLite consensus disorder prediction 456 524 - -
Sed10g0664 605 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Sed10g0664 605 CDD PTP_PTEN 145 310 IPR045101 GO:0016791(InterPro)
Sed10g0664 605 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 518 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed10g0664 605 Pfam PTEN2, C2 domain 321 449 - -
Sed10g0664 605 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Sed10g0664 605 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Sed10g0664 605 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0664 Sed-Chr10:4563138 Sed14g0871 Sed-Chr14:17546161 9.20E-287 dispersed
Sed10g0663 Sed-Chr10:4563138 Sed10g0664 Sed-Chr10:4563138 0.00E+00 tandem
Sed10g0664 Sed-Chr10:4563138 Sed10g0665 Sed-Chr10:4563138 2.20E-272 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0664 K01110 - csv:101213277 1030.01