Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0665 ATGACATATATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATTCCTTGAAGGATTTTACAGAAATCATATGGTAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTGTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGCCAAAGTGCATATGCATGGTTGAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCGAGAACTGGGCTAATGATTTGCAGCCTTCTTTTATTTCTAAAGTTCTTCCAAACATCAGCAGAGGCAATTGACTATTACAATAAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAATATTTTGATCGCATTTTAACACATTTCAACGGAAATTCTCCACCTGGACGAAGGTGCATGCTGAGAGGTTTTCGGCTTCATAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAATCATAGTGAGGTTTTGTTCTCAACAAAAAATCATCCAAAGACTAAGGTTTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTAACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCATGACCGACATGGAGATTTTTATTGTTGGCTAAATACAACAATGACTGAAAACAAAGTGTTATTAAGTGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCAACTCCTGGATTCCAGGTCGAAGTTGTGATGATAGACTATAATGGTACCTTGCCAACACGATTGAAAACTGATTCTGCTGGCAAAGGATCTGATCATCGCTCAATTCACGGTCAGGCATCAGGTCATGAAGCCGCACAGACCAGCGAAAACAAAACTCACGATGTCGAAGAAAACGACGATGATGTATTCTCTGATAGTGATGAAGAAAATGGTGGCACAAAACCAAGTCTAGCTCAATCAACTTCCGGAGCTGCAAAAGCTGACCATTCATCAACAGCAATTGCTTCTGAAATAATTGGGAGTTTGGCACATGAAACTAGTAATTTGTCACTCGGGAATGAGAAAAACCTACAAATTAATGCTCCAAAAGAAGCAAACTTTGATGGCATGACACAACCGTCAGGCCTTGAGACCCCTAATTTGGGTTCAGTAAGTGCAAGCGATTTCAAGGCAATAGCAGCTGATGCGTCAGTTTTTACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1383 39.62 MTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMVEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNKKRCVDGKALVLPSQIRYVKYFDRILTHFNGNSPPGRRCMLRGFRLHKCPYWVRPSITISNHSEVLFSTKNHPKTKVLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYNGTLPTRLKTDSAGKGSDHRSIHGQASGHEAAQTSENKTHDVEENDDDVFSDSDEENGGTKPSLAQSTSGAAKADHSSTAIASEIIGSLAHETSNLSLGNEKNLQINAPKEANFDGMTQPSGLETPNLGSVSASDFKAIAADASVFTFGDEEDFDSE 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4563138 4568532 + Sed0008612.3 Sed10g0665 727169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0665 460 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 104 143 IPR000387 GO:0016311(InterPro)
Sed10g0665 460 MobiDBLite consensus disorder prediction 359 379 - -
Sed10g0665 460 Gene3D Protein tyrosine phosphatase superfamily 1 174 IPR029021 -
Sed10g0665 460 ProSiteProfiles Phosphatase tensin-type domain profile. 1 169 IPR029023 -
Sed10g0665 460 CDD PTP_PTEN 1 165 IPR045101 GO:0016791(InterPro)
Sed10g0665 460 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 69 124 - -
Sed10g0665 460 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 374 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Sed10g0665 460 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 170 IPR029021 -
Sed10g0665 460 Pfam PTEN2, C2 domain 176 304 - -
Sed10g0665 460 MobiDBLite consensus disorder prediction 311 379 - -
Sed10g0665 460 ProSitePatterns Tyrosine specific protein phosphatases active site. 106 116 IPR016130 GO:0016311(InterPro)
Sed10g0665 460 SMART PTEN_C2_2 174 302 IPR014020 -
Sed10g0665 460 ProSiteProfiles C2 tensin-type domain profile. 176 303 IPR014020 -
Sed10g0665 460 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 1 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0663 Sed-Chr10:4563138 Sed10g0665 Sed-Chr10:4563138 2.20E-272 dispersed
Sed10g0665 Sed-Chr10:4563138 Sed14g0871 Sed-Chr14:17546161 4.10E-218 dispersed
Sed10g0664 Sed-Chr10:4563138 Sed10g0665 Sed-Chr10:4563138 2.20E-272 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0665 K01110 - csv:101213277 819.69