Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0675 | ATGGATTTGAACACTTACCTAATCTACACTTTCCTCTCTATTCTCTTCCTTCTTCTCGCTTTCAATCTCAACCGTCGATCCGCCAAAAACCTACCGCCGTCGCCGCCGTCACTTCCGTTCATCGGCCACCTCCATCTCTTGAAAAAACCACTCCACCGAAATTTCCACAACCTCTCCGCCAAGTACGGCCCTATTTTCTCTCTCCGCCTCGGATCTCGCCTCGCCGTCGTCGTATCCTCATCCACGGCGGTGGAGGACTGCTTCACCAAAAACGACGTCGTCCTCGCCAACCGCCCCCGCCTCCTCATCGGCAAACACCTCGGCTACAACTACACCACCATGATCGGAGCTCCGTACGGCGAGCACTGGCGCAACCTCCGCCGGATCGGCGCCATCGAGATCTTCTCCACATCTCGAATCAACAAATTCAGGCAGATCCGGACGGACGAAGTGAATCGATTGCTGCGGAAACTATCTCGAAACTCGACGGATCGATTCTCGAAGGTGGAGATGCAATCGGCGCTGTCAGAGTTGACGTTCAACGTTTCGATGAGGATGGCGGCCGGAAAGAGGTACTACGGCGAGGAGGTGGCGGAGGAGGAGGAGGCCCGGCGGTTCAGGGCGTTGATTAAGGAGATGGTTGGGTTCGGCGGGGTTTCGAATCCGGGGGATTTTTTCCCAATTTTGAAGTGGATTTCGAATGATTTTGAGAGGAAATTGATTCTGTTGGGGAAGAAAATGGATGATTTCTTGCAGGGATTGATTGATGATCATCGGACGGTGGAGGATGAAGGAAGGAACACCATGATTGATCATTTGTTATCTCTGCAACAATCGGATCCTGCTCATTATGACGATCAAATTATCAAGGGATTTATATTGGTGTTACTTACGGCAGGAACGGACACGGCATCCGTGACAATGGAATGGGCCTTATCTCATCTGCTGAACAATCCTCAAGTGTTGAAAAAGGCAAGAGATGAACTAGATACTCAAATTGGACAAGAACGCCTCGTTGAAGAACAAGACCTTCCCAAACTACCCTATCTTCAAGGAATCATTTCTGAGACTCTCCGATTGACTCCTGCCGCACCAATGTTGTTGCCCCATTATGCAGCCAAAGATTGCACAATATGTGGATTCGACGTACCACGCGACGCGATGGTACTAGTTAATGCATGGGCCATACACAGGGATCCAAATGAATGGAAGGAGCCCACAAATTTTAGACCAGAACGATATCTAGAGTCAGAAGTTGAGCCTCACAAGTTGGTGCCTTTCGGAGTAGGGAGGCGTGCTTGTCCTGGATCGGCCATGGCGCAACGGGTGATGGGTCTAACTTTAGCTGCTCTGATTCAGTGCTTCGAATGGGAGAGAATTGGAGAAGAAGAAATTGATATGAATGAGGGGGCAGGTACCACAATGCCCAAGCTTGTGCCATTGGAGGCCATGTGCAAAGCTCGTCCCATCATGAACAATGTCTTATTCTCTAACAAGTAA | 1500 | 50.07 | MDLNTYLIYTFLSILFLLLAFNLNRRSAKNLPPSPPSLPFIGHLHLLKKPLHRNFHNLSAKYGPIFSLRLGSRLAVVVSSSTAVEDCFTKNDVVLANRPRLLIGKHLGYNYTTMIGAPYGEHWRNLRRIGAIEIFSTSRINKFRQIRTDEVNRLLRKLSRNSTDRFSKVEMQSALSELTFNVSMRMAAGKRYYGEEVAEEEEARRFRALIKEMVGFGGVSNPGDFFPILKWISNDFERKLILLGKKMDDFLQGLIDDHRTVEDEGRNTMIDHLLSLQQSDPAHYDDQIIKGFILVLLTAGTDTASVTMEWALSHLLNNPQVLKKARDELDTQIGQERLVEEQDLPKLPYLQGIISETLRLTPAAPMLLPHYAAKDCTICGFDVPRDAMVLVNAWAIHRDPNEWKEPTNFRPERYLESEVEPHKLVPFGVGRRACPGSAMAQRVMGLTLAALIQCFEWERIGEEEIDMNEGAGTTMPKLVPLEAMCKARPIMNNVLFSNK | 499 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4665286 | 4667702 | - | Sed0012808.1 | Sed10g0675 | 727179 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0675 | 499 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 427 | 436 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g0675 | 499 | Gene3D | Cytochrome P450 | 18 | 486 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | SUPERFAMILY | Cytochrome P450 | 32 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 392 | 416 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 59 | 78 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 351 | 369 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 308 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 434 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 178 | 196 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 83 | 104 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 424 | 434 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | E-class P450 group I signature | 288 | 305 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | FunFam | Cytochrome P450 family protein | 23 | 491 | - | - | |
| Sed10g0675 | 499 | PRINTS | P450 superfamily signature | 299 | 316 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | P450 superfamily signature | 434 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | P450 superfamily signature | 352 | 363 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | PRINTS | P450 superfamily signature | 425 | 434 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | Pfam | Cytochrome P450 | 32 | 472 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0675 | 499 | CDD | CYP81 | 63 | 481 | - | - | |
| Sed10g0675 | 499 | PANTHER | CYTOCHROME P450 82C3-RELATED | 14 | 488 | IPR050651 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g3734 | Sed-Chr5:45252888 | Sed10g0675 | Sed-Chr10:4665286 | 1.40E-163 | dispersed | |
| Sed07g0153 | Sed-Chr7:1388970 | Sed10g0675 | Sed-Chr10:4665286 | 1.50E-157 | dispersed | |
| Sed10g0672 | Sed-Chr10:4631370 | Sed10g0675 | Sed-Chr10:4665286 | 3.40E-36 | dispersed | |
| Sed10g0675 | Sed-Chr10:4665286 | Sed13g1787 | Sed-Chr13:22916394 | 1.80E-134 | dispersed | |
| Sed10g0673 | Sed-Chr10:4644986 | Sed10g0675 | Sed-Chr10:4665286 | 2.90E-206 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0675 | K13260 | - | csv:101215449 | 765.377 |