Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0704 ATGAGCTGCAACGGCTGCCGCGTTCTCCGAAAGGGCTGCAGCGAATCCTGCATCCTCCGCCCCTGCCTCCAGTGGATCGACTCCGCCGAATCCCAAGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCCGAACCACAGAGACCTTCTTTGTTTCAGTCTCTCTTGTTTGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTCGGCCTTCTCTGGACCGGCAACTGGCACATCTGCCAGGCCGCCGTCGAGACGGTGTTGCGCGGCGGCACGTTGCGGCCGATGAACCAGTTTCTTCACGGCGGATCTCCGAATCCGGCCTCCGACGAGACGAATTCCGACGCCGAAGTCGCCTGTTCGGACATGTGGAAGCTTCGCGATTCTTATCCGAGCTCTCGATTCTCCAACTCCAGATCTAGACTCTCGCCGAAACGGAAGCGATCTGAGGAATCCACCAACAACGATTTGGATCTCTGCTTGACGCCTAAATCAACCTGCCGCCGCGCCGGTACTCCGTCGATGAACTCCGACGAATCCGAAACCACTACCTGCTTCGACAGCGCCGCCCTCGCCGATCTTCGTCACTACGAACGGAAGCTTCTGAATCTATTCGTTTAA 663 59.58 MSCNGCRVLRKGCSESCILRPCLQWIDSAESQGHATVFVAKFFGRAGLMSFISAVPEPQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNQFLHGGSPNPASDETNSDAEVACSDMWKLRDSYPSSRFSNSRSRLSPKRKRSEESTNNDLDLCLTPKSTCRRAGTPSMNSDESETTTCFDSAALADLRHYERKLLNLFV 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4931641 4932848 - Sed0018143.1 Sed10g0704 727208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0704 220 MobiDBLite consensus disorder prediction 144 171 - -
Sed10g0704 220 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Sed10g0704 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 219 - GO:0010468(PANTHER)
Sed10g0704 220 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2708 Sed-Chr1:21710980 Sed10g0704 Sed-Chr10:4931641 1.20E-43 dispersed
Sed07g2092 Sed-Chr7:36329658 Sed10g0704 Sed-Chr10:4931641 1.70E-38 dispersed
Sed10g0704 Sed-Chr10:4931641 Sed12g2071 Sed-Chr12:31483170 2.30E-38 dispersed
Sed10g0704 Sed-Chr10:4931641 Sed14g0907 Sed-Chr14:18051836 9.10E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39730 PF03195 LOB 3.40E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0704 - - - 0.0