Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0719 ATGGATACCTTGTTCCGCCTTGTCAATCTCCAATCTGATCAACAATCCTACAACTCGAGTCGATCGACGAATTCCAGCAGCTCTAGATCTTCGAGAAAAAACCAATATCAATACCAAGACGAAGAATGCTACAATCTCCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCCTACAATCCACACCCACCTTCCACCACCACCACCGCTGCCACCACTCCGACTCCTGTCGATCAATACTCATTCGCCTCACCTCCCCCGGATTTCAACTTCGAATTCTCGGGGAGGTGGGCCAATGATATTCTGTTAGAAACGGCGAGAGCCATTTCTGACAGAAACAGCGCTCGAGTGCAACAGTTGATGTGGATGCTAAACGAACTCAGCTCGCCGTACGGCGATACGGATCAAAAGCTCGCAGCCTATTTCCTACAGGGATTGTTTAGTCGGATGACCGAGTCCGGAGACCGAAACTACCGCGCCTTGGCGACGGCGTCGGAGAAGACATGCTCATTCGAATCGACACGGAAAACGACGCTGAAATTTCAGGAGGTTAGTCCGTGGACCACATTTGGTCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATCATAGACATCAGCAACACCTATTGCACCCAATGGCCTACGTTGCTAGAAGCCCTAGCTACCCGTACGGACGACACGCCGCATCTCCGCCTCACCACCGTCGTCACCACAAAATCCGGCGGCGGAAGCGGCGGAGTCGCGGCGTCGCAAAAAGTAATGAAGGAAATCGGTACGAGAATGGAGAAATTCGCGAGGCTCATGGGCGTACCTTTCAAATTCCAGACACTGTACCATGCCGGCGACCTCTCCGAATTGGATTTCGCGAAACTAGACATCAAAGACGACGAGGCGCTCGCCGTCAACTGCGTCGGCGCGTTGCGATCCGTGGCGGCGGTCGATAACCGCCGCGACTTCCTGATCTCGTCGTTCCGGAGTTTACGGCCGCGGATCATCACCGTGATCGAGGAGGAAGCCGATCTGGACGTCGGCGCCGACGGAATCGAATTCGTGAGAGGATTTCAGGAGTGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACTCGGACGAGCAACGAGCGGTTGATGCTGGAGAGGGCGGCGGGAAGGGCGATTGTGGATCTGGTGGCGTGTTCGGTGGTGGAGTCCGTGGAGCGGCGGGAATCGGCGGGGCGGTGGGCGCGGCGGCTGCATGGCGGCGGATTTGCTCCGGCGGCGTTCAGCGATGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAAGGGTGGGCGATGAGTCAGAGCTCCGACGTGGCCGGAATATTCTTGACGTGGAAAGATCAGCCGGTGGTGTGGGCCAGCGCTTGGAGGCCTTGA 1467 54.87 MDTLFRLVNLQSDQQSYNSSRSTNSSSSRSSRKNQYQYQDEECYNLLMDEEDFSSSSNSRQYYNPYNPHPPSTTTTAATTPTPVDQYSFASPPPDFNFEFSGRWANDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQGLFSRMTESGDRNYRALATASEKTCSFESTRKTTLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKSGGGSGGVAASQKVMKEIGTRMEKFARLMGVPFKFQTLYHAGDLSELDFAKLDIKDDEALAVNCVGALRSVAAVDNRRDFLISSFRSLRPRIITVIEEEADLDVGADGIEFVRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSVVESVERRESAGRWARRLHGGGFAPAAFSDEVCDDVRALLRRYKEGWAMSQSSDVAGIFLTWKDQPVVWASAWRP 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5020101 5023254 - Sed0008133.1 Sed10g0719 727223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0719 488 Pfam GRAS domain family 107 487 IPR005202 -
Sed10g0719 488 ProSiteProfiles GRAS family profile. 96 487 IPR005202 -
Sed10g0719 488 MobiDBLite consensus disorder prediction 12 36 - -
Sed10g0719 488 MobiDBLite consensus disorder prediction 55 82 - -
Sed10g0719 488 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 486 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0460 Sed-Chr1:3513089 Sed10g0719 Sed-Chr10:5020101 2.40E-147 dispersed
Sed05g1993 Sed-Chr5:33236675 Sed10g0719 Sed-Chr10:5020101 3.60E-46 dispersed
Sed09g0401 Sed-Chr9:3830446 Sed10g0719 Sed-Chr10:5020101 3.10E-117 dispersed
Sed10g0719 Sed-Chr10:5020101 Sed14g0535 Sed-Chr14:5374746 7.00E-35 dispersed
Sed10g0719 Sed-Chr10:5020101 Sed14g0906 Sed-Chr14:18007399 7.50E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39736 PF03514 GRAS 7.50E-102 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0719 K27743 - csv:101204711 820.076