Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0720 | ATGGGGAAGAAACAGCACAGCAAAGACCGAATGTTCATTACGAAGACCGAATGGGCGACGGAATGGGGCGGCGCCAAACCAAAAGACTCCCAAACCCCTTTCAAACGCCTTCCTTACTACTGCTGCGCGCTTACATTTACACCCTTCGAGAATCCTGTTTGCACTGCCGATGGCAGCGTCTTCGAGCTAATGAATATCACCCCTTATATTCGGAAGTATGGTAAAAATCCTGTTACTGGAGCTCCTCTGAAGCTGGAGGATTTAATTCCGCTGATTTTTCACAAGAATTCTGAAGGTGAGTTCGAGTGCCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTTCTATAAAGACCACTGGAAATGTCTTCTGCTATGAGGCAATTAAAGAATTAAATATCAAGACCAAAAACTGGAAGGAACTTCTCACCGATGAACCATTTAGTAGGGAAGATATTATAACCATTCAGAACCCGAATGCGCTTGATAGTAAGGCTCTCTTGGATTTTGATCATGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTTCAGAAAATGAAATCAGATCCAACGCATAACATAAATGTGTCTGGGGACATCAAGCAGATGCTCAAGGAACTTGGAACCGAAAAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGGGGTAAGGCACAGAAAGAAAGGGCAGACGCGCTTGCTGCAATTCTAGAGGCTAGGTCACGCATTAAAGAAAATTCAAAGGAAAATGGAAAAGTAGAGGAGAAACCTACACAGGCGTTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCAGCGAAAGCTGCTCCAAGTGAAAAAACAGCTGCTCGAATTGCAATGCACATGGCGGGTGAGAGGGCACCAGTGAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCTCGATCCTTCACATCTACATCTTTCGATCCTGTTACAAAGAACGAACATGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGATACGTACAGTTGCATACAACACATGGAGATTTGAATATTGAGCTGCATTGTGATATGACTCCAAGGACATGTGAGAATTTCATCACACTGTGTGAAAATAACTACTACAATGGAGTAGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGCGATCCAACTGGTACTGGAAAAGGAGGTGAATCTATATGGGGAAAGCCCTTCAATGATGAACTCAACTCCAAGTTGCTTCATTCTGGAAGGGGTGTTGTCAGCATGGCAAATAGTGGCCCCCACACAAATGGATCTCAGTTCTTCATTCTGTACAAATCTGCCAACCATTTAAACTTCAAGCATACAGTATTTGGCGGTGTTGTTGGTGGTTTGACTACTTTGGCAGCAATGGAAAAGGTTCCCGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACTAATGTGACAGTTTTTGTCAATCCATACTCAGAACCCGATGAAGAAGAGGAACAAAATAAAAAAGACGAGAAGAGTGTTGAAGATGAAGAAAACGATAAGGTTGGATCATGGTACAGTAACCCAGGCACCAGGGCAGCAGAAAACGGAGCGGCTGGTGGCGGTGTCGGGAAATATTTAAAAGCAAGGAGTGCCCAATCCAAATCCCCGGCAGTTGATGCTAGTCTAAGAGAAACTACCTTAACCAAGAAAAGAACAGCAGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA | 1782 | 43.15 | MGKKQHSKDRMFITKTEWATEWGGAKPKDSQTPFKRLPYYCCALTFTPFENPVCTADGSVFELMNITPYIRKYGKNPVTGAPLKLEDLIPLIFHKNSEGEFECPVLNKVFTEFTHIVSIKTTGNVFCYEAIKELNIKTKNWKELLTDEPFSREDIITIQNPNALDSKALLDFDHVKNSLKVDDEELQKMKSDPTHNINVSGDIKQMLKELGTEKGRQTALHGGGGGKAQKERADALAAILEARSRIKENSKENGKVEEKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSFDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDMTPRTCENFITLCENNYYNGVAFHRSIRNFMIQGGDPTGTGKGGESIWGKPFNDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPLEEIKITNVTVFVNPYSEPDEEEEQNKKDEKSVEDEENDKVGSWYSNPGTRAAENGAAGGGVGKYLKARSAQSKSPAVDASLRETTLTKKRTAAGEFKDFSSW | 593 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5031274 | 5036745 | - | Sed0012214.1 | Sed10g0720 | 727224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0720 | 593 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 354 | 501 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 350 | 501 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | SUPERFAMILY | RING/U-box | 37 | 104 | - | - | |
| Sed10g0720 | 593 | ProSiteProfiles | U-box domain profile. | 35 | 108 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Sed10g0720 | 593 | MobiDBLite | consensus disorder prediction | 510 | 531 | - | - | |
| Sed10g0720 | 593 | FunFam | Peptidyl-prolyl cis-trans isomerase cyp65 | 331 | 515 | - | - | |
| Sed10g0720 | 593 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 385 | 402 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Sed10g0720 | 593 | MobiDBLite | consensus disorder prediction | 503 | 593 | - | - | |
| Sed10g0720 | 593 | Gene3D | - | 329 | 515 | IPR029000 | - | |
| Sed10g0720 | 593 | CDD | cyclophilin_RING | 350 | 508 | - | - | |
| Sed10g0720 | 593 | FunFam | Peptidyl-prolyl cis-trans isomerase 2 | 41 | 96 | - | - | |
| Sed10g0720 | 593 | SUPERFAMILY | Cyclophilin-like | 350 | 520 | IPR029000 | - | |
| Sed10g0720 | 593 | Pfam | U-box domain | 39 | 90 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Sed10g0720 | 593 | SMART | Ubox_2 | 39 | 101 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Sed10g0720 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 433 | 448 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 364 | 379 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 390 | 402 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 448 | 460 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 461 | 476 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed10g0720 | 593 | CDD | RING-Ubox_PPIL2 | 38 | 110 | IPR026951 | - | |
| Sed10g0720 | 593 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 95 | IPR013083 | - | |
| Sed10g0720 | 593 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 339 | 511 | IPR044666 | GO:0000209(PANTHER)|GO:0061630(PANTHER)|GO:0071013(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g0720 | Sed-Chr10:5031274 | Sed12g0236 | Sed-Chr12:1330355 | 8.00E-49 | dispersed | |
| Sed10g0720 | Sed-Chr10:5031274 | Sed10g0721 | Sed-Chr10:5031274 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0720 | K10598 | - | csv:101204462 | 1044.26 |