Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0741 ATGGGCGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACGATATTAACGGATTCAGAGTTCAGCTCAATTTTGCATCAGCGCTCGAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCCATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGCCTGTAAGCACCGTGCTTCCGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAATTAGCACTAATGGTCCAAAAGAACCACTAGCAAGGTTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGATCGGGCTGCAATTGCTCTGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAATTTCAACCTTATCAGGAAGAAGAAATGTTCCATTATTACTTCTTGAGGACAAGCAGACGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGATAATGACTGCAGAAGAGGCAGCTAAAGCTGCTGCACGTGCAGTAGCTGAGGCGGAGGCCGCCATTGCAGAGGCTGAAAGGGCTGCCAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCTCAAGTGTTTGCTGAAGCAGCAATGAAGGCATTAGAGTGCAGAACACTCCCTAGTAGAAGTCCTGTTCAGAATGTTCTTCTCCAAGGCAATGAGTTTTGA 921 43.87 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDSEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMPVSTVLPNEEIVDAKPLAISNGTISTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPISTLSGRRNVPLLLLEDKQTDSSKAEKSEVKIITKSQVDSELSKMKIMTAEEAAKAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTLPSRSPVQNVLLQGNEF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5083604 5097778 - Sed0014323.1 Sed10g0741 727245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0741 306 FunFam Telomere repeat-binding factor 1 2 58 - -
Sed10g0741 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Sed10g0741 306 CDD SANT_TRF 6 57 - -
Sed10g0741 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sed10g0741 306 SUPERFAMILY Winged helix DNA-binding domain 116 192 IPR036390 -
Sed10g0741 306 Coils Coil 233 277 - -
Sed10g0741 306 Gene3D - 118 194 IPR036388 -
Sed10g0741 306 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Sed10g0741 306 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed10g0741 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed10g0741 306 Gene3D - 8 90 - -
Sed10g0741 306 FunFam Telomere repeat-binding factor 1 116 196 - -
Sed10g0741 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Sed10g0741 306 SMART sant 4 59 IPR001005 -
Sed10g0741 306 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Sed10g0741 306 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2239 Sed-Chr6:46001956 Sed10g0741 Sed-Chr10:5083604 2.10E-26 dispersed
Sed07g1256 Sed-Chr7:9409707 Sed10g0741 Sed-Chr10:5083604 9.20E-58 dispersed
Sed10g0741 Sed-Chr10:5083604 Sed14g0929 Sed-Chr14:18295865 1.90E-110 dispersed
Sed10g0741 Sed-Chr10:5083604 Sed14g0928 Sed-Chr14:18295865 3.50E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39738 PF00538 Linker_histone 6.50E-11 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0741 K09422 - csv:101202913 471.47