Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0741 ATGGGCGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACGATATTAACGGATTCAGAGTTCAGCTCAATTTTGCATCAGCGCTCGAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCCATATGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGCCTGTAAGCACCGTGCTTCCGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAATTAGCACTAATGGTCCAAAAGAACCACTAGCAAGGTTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGATCGGGCTGCAATTGCTCTGTACATAGAGGAGCATTACTGGGCCCCACCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAATTTCAACCTTATCAGGAAGAAGAAATGTTCCATTATTACTTCTTGAGGACAAGCAGACGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGATAATGACTGCAGAAGAGGCAGCTAAAGCTGCTGCACGTGCAGTAGCTGAGGCGGAGGCCGCCATTGCAGAGGCTGAAAGGGCTGCCAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCTCAAGTGTTTGCTGAAGCAGCAATGAAGGCATTAGAGTGCAGAACACTCCCTAGTAGAAGTCCTGTTCAGAATGTTCTTCTCCAAGGCAATGAGTTTTGA 921 43.87 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDSEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMPVSTVLPNEEIVDAKPLAISNGTISTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPISTLSGRRNVPLLLLEDKQTDSSKAEKSEVKIITKSQVDSELSKMKIMTAEEAAKAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTLPSRSPVQNVLLQGNEF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5083604 5097778 - Sed0014323.1 Sed10g0741 727245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0741 306 FunFam Telomere repeat-binding factor 1 2 58 - -
Sed10g0741 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Sed10g0741 306 CDD SANT_TRF 6 57 - -
Sed10g0741 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sed10g0741 306 SUPERFAMILY Winged helix DNA-binding domain 116 192 IPR036390 -
Sed10g0741 306 Coils Coil 233 277 - -
Sed10g0741 306 Gene3D - 118 194 IPR036388 -
Sed10g0741 306 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Sed10g0741 306 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed10g0741 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed10g0741 306 Gene3D - 8 90 - -
Sed10g0741 306 FunFam Telomere repeat-binding factor 1 116 196 - -
Sed10g0741 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Sed10g0741 306 SMART sant 4 59 IPR001005 -
Sed10g0741 306 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Sed10g0741 306 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0741 K09422 - - csv:101202913 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2239 Sed-Chr6:46001956 Sed10g0741 Sed-Chr10:5083604 2.10E-26 dispersed
Sed07g1256 Sed-Chr7:9409707 Sed10g0741 Sed-Chr10:5083604 9.20E-58 dispersed
Sed10g0741 Sed-Chr10:5083604 Sed14g0929 Sed-Chr14:18295865 1.90E-110 dispersed
Sed10g0741 Sed-Chr10:5083604 Sed14g0928 Sed-Chr14:18295865 3.50E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed13g0429 . 1 340 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 6.6e-68 255.4
Sed07g1256 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 7.3e-67 251.9
Sed07g1257 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 7.3e-67 251.9
Sed10g0741 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 1.0e-60 231.5
Sed10g0741 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.1 1.8e-65 247.3
Sed10g0741 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 2.6e-56 216.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39738 PF00538 Linker_histone 6.50E-11 CL0123 Sed TF