Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0753 | ATGAATAATGTTAATGGCAACAACCCCAATTGGCTAGGCTACTCTGTCTCTCCTAACATGAACATGAACCCTTCTTCTCAATTCAACTATGGCATTTGCTATGGTATTGATGGAGAAAATGCTGGTTTTTACTCACAATTATCTGCCATGCCACTCAAGTCTGATGGCTCCATTTGTTCAATGGAAGCTTTCACCAGGCAGCACCCACAAGTTGTGAGTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACAATGGGGTCTCATAACTATGCAAGTAATGATAGGGAGGCCATGGCTTTAAGCCTAGACAGTATATTTTGCCATCAAAACCAAACTCATGAGCCCAACAATAACCAATTACCCTTTGCACATTTCCCATCTTTGAGAGCAGACAGTGAAGTGAAGGCTGATGAGATTTCTGATTTGAAGAGTTGGGTTGTTCCAAGGAACTATGGTTCTTTTGAGCAGAAAATGGTTGGTTGTATGAGTGAAACTGGTTCCATTAATGCTATGGGTTATGGAGATTTGCAGTCATTGAGCCTGTCCATGACTATGAGCCCTAGCTCTCAGTCAAGCTGTGTCACTGCCACACAACATGTTTCACCTGTCATGGCTGAATGCTCTGCTGTGGATACTAAGAAAAGAGGCCATGAGAAGTCTGATCAGAAGCAAATTGTTCATAGAAAGTCTTTGGATACATTTGGACAGAGAACCTCACAGTATAGAGGTGTTACAAGGCACAGATGGACGGGGAGGTATGAAGCACATTTATGGGACAACAGCTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGACAAGTGTACCTAGGAGGTTATGATATGGAAGAGAAAGCTGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACTCACATTAACTGTCCTTTGGAAAACTATCAGAAAGAATTGGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTTGCTCACCTGAGAAGGAGAAGCAGCGGGTTCTCGAGAGGGGCCTCGATTTACCGTGGCGTAACAAGACATCATCAACATGGAAGGTGGCAGGCGCGGATTGGTCGAGTTGCTGGTAATAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCCGAGGCCTACGACATAGCAGCGATCAAGTTTCGAGGACTGAATGCGGTTACTAATTTTGACATCACGAGGTATGACGTGGAGCGGATCATTGCAAGCAATTCACTCCTTAGTGGCGATTTGGCTAAGAAAAAGCAGCAGCCAGAGTCTGACAATGAATCTCTTAGACAAAGCCCTCCTCACAACAACAATGTAGAAGCCATGCCTTTGCCCTCACATTGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCGTTCCGAAACCTCGATTGATAACCGATGATGGAACACAACTAGGAATCGAAGACTCGACGAAAATGGGAGCTCATTTCTCCAATGCATCATCAATGGTGACAAGCTGCAGCTTGAGCAGCTCGAGAGAGGAGAGTCCAGACAAGACGAGCCTTTCGATGGTGTTCGGAATGCCTCAATCGATAACTAAGCCGTTTGCTGCCTCGGCTAGTAATATCAACTCCTCATGGATTGCATCTGCCCAACAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCTGTCTTTGCTGCTTGGACTGATACTTAA | 1716 | 45.05 | MNNVNGNNPNWLGYSVSPNMNMNPSSQFNYGICYGIDGENAGFYSQLSAMPLKSDGSICSMEAFTRQHPQVVSPKLEDFFGGATMGSHNYASNDREAMALSLDSIFCHQNQTHEPNNNQLPFAHFPSLRADSEVKADEISDLKSWVVPRNYGSFEQKMVGCMSETGSINAMGYGDLQSLSLSMTMSPSSQSSCVTATQHVSPVMAECSAVDTKKRGHEKSDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINCPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDITRYDVERIIASNSLLSGDLAKKKQQPESDNESLRQSPPHNNNVEAMPLPSHCQSESDWKMALYQSSQQLVPKPRLITDDGTQLGIEDSTKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSITKPFAASASNINSSWIASAQQLRAANCMSQLPVFAAWTDT | 571 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5206626 | 5210646 | + | Sed0008770.1 | Sed10g0753 | 727257 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0753 | 571 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 239 | 308 | - | - | |
Sed10g0753 | 571 | ProSiteProfiles | AP2/ERF domain profile. | 342 | 400 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | FunFam | AP2-like ethylene-responsive transcription factor | 341 | 402 | - | - | |
Sed10g0753 | 571 | MobiDBLite | consensus disorder prediction | 419 | 452 | - | - | |
Sed10g0753 | 571 | CDD | AP2 | 239 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | PRINTS | Ethylene responsive element binding protein signature | 382 | 402 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | PRINTS | Ethylene responsive element binding protein signature | 241 | 252 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | SUPERFAMILY | DNA-binding domain | 239 | 307 | IPR016177 | GO:0003677(InterPro) | |
Sed10g0753 | 571 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 185 | 466 | - | - | |
Sed10g0753 | 571 | MobiDBLite | consensus disorder prediction | 431 | 450 | - | - | |
Sed10g0753 | 571 | CDD | AP2 | 341 | 402 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | ProSiteProfiles | AP2/ERF domain profile. | 240 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | SUPERFAMILY | DNA-binding domain | 341 | 401 | IPR016177 | GO:0003677(InterPro) | |
Sed10g0753 | 571 | Gene3D | AP2/ERF domain | 342 | 402 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | Gene3D | AP2/ERF domain | 239 | 308 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | Pfam | AP2 domain | 343 | 392 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | Pfam | AP2 domain | 240 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | Coils | Coil | 307 | 327 | - | - | |
Sed10g0753 | 571 | SMART | rav1_2 | 342 | 406 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g0753 | 571 | SMART | rav1_2 | 240 | 312 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0753 | Sed-Chr10:5206626 | Sed10g1151 | Sed-Chr10:16090429 | 1.50E-137 | dispersed | |
Sed06g2260 | Sed-Chr6:46176610 | Sed10g0753 | Sed-Chr10:5206626 | 1.30E-103 | transposed | |
Sed10g0753 | Sed-Chr10:5206626 | Sed14g0948 | Sed-Chr14:18604434 | 5.50E-249 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39741 | PF00847 | AP2 | 1.00E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0753 | K09285 | - | csv:101203323 | 934.865 |