Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0753 ATGAATAATGTTAATGGCAACAACCCCAATTGGCTAGGCTACTCTGTCTCTCCTAACATGAACATGAACCCTTCTTCTCAATTCAACTATGGCATTTGCTATGGTATTGATGGAGAAAATGCTGGTTTTTACTCACAATTATCTGCCATGCCACTCAAGTCTGATGGCTCCATTTGTTCAATGGAAGCTTTCACCAGGCAGCACCCACAAGTTGTGAGTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACAATGGGGTCTCATAACTATGCAAGTAATGATAGGGAGGCCATGGCTTTAAGCCTAGACAGTATATTTTGCCATCAAAACCAAACTCATGAGCCCAACAATAACCAATTACCCTTTGCACATTTCCCATCTTTGAGAGCAGACAGTGAAGTGAAGGCTGATGAGATTTCTGATTTGAAGAGTTGGGTTGTTCCAAGGAACTATGGTTCTTTTGAGCAGAAAATGGTTGGTTGTATGAGTGAAACTGGTTCCATTAATGCTATGGGTTATGGAGATTTGCAGTCATTGAGCCTGTCCATGACTATGAGCCCTAGCTCTCAGTCAAGCTGTGTCACTGCCACACAACATGTTTCACCTGTCATGGCTGAATGCTCTGCTGTGGATACTAAGAAAAGAGGCCATGAGAAGTCTGATCAGAAGCAAATTGTTCATAGAAAGTCTTTGGATACATTTGGACAGAGAACCTCACAGTATAGAGGTGTTACAAGGCACAGATGGACGGGGAGGTATGAAGCACATTTATGGGACAACAGCTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGACAAGTGTACCTAGGAGGTTATGATATGGAAGAGAAAGCTGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACTCACATTAACTGTCCTTTGGAAAACTATCAGAAAGAATTGGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTTGCTCACCTGAGAAGGAGAAGCAGCGGGTTCTCGAGAGGGGCCTCGATTTACCGTGGCGTAACAAGACATCATCAACATGGAAGGTGGCAGGCGCGGATTGGTCGAGTTGCTGGTAATAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCCGAGGCCTACGACATAGCAGCGATCAAGTTTCGAGGACTGAATGCGGTTACTAATTTTGACATCACGAGGTATGACGTGGAGCGGATCATTGCAAGCAATTCACTCCTTAGTGGCGATTTGGCTAAGAAAAAGCAGCAGCCAGAGTCTGACAATGAATCTCTTAGACAAAGCCCTCCTCACAACAACAATGTAGAAGCCATGCCTTTGCCCTCACATTGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCGTTCCGAAACCTCGATTGATAACCGATGATGGAACACAACTAGGAATCGAAGACTCGACGAAAATGGGAGCTCATTTCTCCAATGCATCATCAATGGTGACAAGCTGCAGCTTGAGCAGCTCGAGAGAGGAGAGTCCAGACAAGACGAGCCTTTCGATGGTGTTCGGAATGCCTCAATCGATAACTAAGCCGTTTGCTGCCTCGGCTAGTAATATCAACTCCTCATGGATTGCATCTGCCCAACAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCTGTCTTTGCTGCTTGGACTGATACTTAA 1716 45.05 MNNVNGNNPNWLGYSVSPNMNMNPSSQFNYGICYGIDGENAGFYSQLSAMPLKSDGSICSMEAFTRQHPQVVSPKLEDFFGGATMGSHNYASNDREAMALSLDSIFCHQNQTHEPNNNQLPFAHFPSLRADSEVKADEISDLKSWVVPRNYGSFEQKMVGCMSETGSINAMGYGDLQSLSLSMTMSPSSQSSCVTATQHVSPVMAECSAVDTKKRGHEKSDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINCPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDITRYDVERIIASNSLLSGDLAKKKQQPESDNESLRQSPPHNNNVEAMPLPSHCQSESDWKMALYQSSQQLVPKPRLITDDGTQLGIEDSTKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSITKPFAASASNINSSWIASAQQLRAANCMSQLPVFAAWTDT 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5206626 5210646 + Sed0008770.1 Sed10g0753 727257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0753 571 FunFam AP2-like ethylene-responsive transcription factor ANT 239 308 - -
Sed10g0753 571 ProSiteProfiles AP2/ERF domain profile. 342 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 FunFam AP2-like ethylene-responsive transcription factor 341 402 - -
Sed10g0753 571 MobiDBLite consensus disorder prediction 419 452 - -
Sed10g0753 571 CDD AP2 239 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 PRINTS Ethylene responsive element binding protein signature 382 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 SUPERFAMILY DNA-binding domain 239 307 IPR016177 GO:0003677(InterPro)
Sed10g0753 571 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 185 466 - -
Sed10g0753 571 MobiDBLite consensus disorder prediction 431 450 - -
Sed10g0753 571 CDD AP2 341 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 ProSiteProfiles AP2/ERF domain profile. 240 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 SUPERFAMILY DNA-binding domain 341 401 IPR016177 GO:0003677(InterPro)
Sed10g0753 571 Gene3D AP2/ERF domain 342 402 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 Gene3D AP2/ERF domain 239 308 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 Pfam AP2 domain 343 392 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 Pfam AP2 domain 240 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 Coils Coil 307 327 - -
Sed10g0753 571 SMART rav1_2 342 406 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g0753 571 SMART rav1_2 240 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0753 Sed-Chr10:5206626 Sed10g1151 Sed-Chr10:16090429 1.50E-137 dispersed
Sed06g2260 Sed-Chr6:46176610 Sed10g0753 Sed-Chr10:5206626 1.30E-103 transposed
Sed10g0753 Sed-Chr10:5206626 Sed14g0948 Sed-Chr14:18604434 5.50E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39741 PF00847 AP2 1.00E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0753 K09285 - csv:101203323 934.865