Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0764 ATGGGTTTTGACAATCTTTCCAATTCAAGCCTCCTTTTGAATTTGGGATTAACCCTCCCCTCCAACCCCCCAAACCACTCTCAAAAGCCCAAAATCCCCATTGATCTGTTCAACTTTGAATCCGACCCGTCGCTAACTTTAAGGCTGTCACCGGCGGCGGATCTGTGCAGACAGCCGTCGCCTCAGAGCGCGGTTTCTTCGCTCTCCGGCGGCGGGAGAGTGAAGCGCGAAAGAGAGGTTTCCGGCGAGGATGGCGAAGAAGAGAAAGGCTGTTCTCGAATTAGCGATGAAGAGGAAGATGGGTCGAATTCAAGGAAGAAACTTAGGCTCACCAAACAACAATCTGCGCTTTTGGAACAGAGCTTTAAACTTCATAGCACTCTGAATCCTAAGGATAAACTGGGTTTGGCGAGAGAGTTGAATCTTCGGCCGAGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGGTTCTAAAGAGATGCTGCGAAACTCTAACAGACGAAAATAGGAGGCTGCAAAAAGAGCTTCAAGAACTCAAAGCTCTGAAGCTAACGCAGCCTCTATTCATGCCGATGTCGGCGGCAACACTCACCATCTGCCCGTCCTGCGAGCGGATCGGCGGTGCTGCCGCCACCGTCAACGGGGACGGAAAATCCAACGCCCCATTTTTAACGGCTCCCAAGCCCCGGTTTTACAAACCCTTCACTAATCCTTCTGCTGCTTGCTAA 765 50.59 MGFDNLSNSSLLLNLGLTLPSNPPNHSQKPKIPIDLFNFESDPSLTLRLSPAADLCRQPSPQSAVSSLSGGGRVKREREVSGEDGEEEKGCSRISDEEEDGSNSRKKLRLTKQQSALLEQSFKLHSTLNPKDKLGLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCETLTDENRRLQKELQELKALKLTQPLFMPMSAATLTICPSCERIGGAAATVNGDGKSNAPFLTAPKPRFYKPFTNPSAAC 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5393669 5395861 + Sed0019516.1 Sed10g0764 727268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0764 254 CDD homeodomain 105 162 IPR001356 GO:0003677(InterPro)
Sed10g0764 254 Pfam Homeodomain 105 159 IPR001356 GO:0003677(InterPro)
Sed10g0764 254 Coils Coil 167 197 - -
Sed10g0764 254 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 250 IPR050762 -
Sed10g0764 254 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed10g0764 254 Pfam Homeobox associated leucine zipper 161 195 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0764 254 SMART halz 161 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed10g0764 254 MobiDBLite consensus disorder prediction 56 108 - -
Sed10g0764 254 MobiDBLite consensus disorder prediction 72 107 - -
Sed10g0764 254 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677(InterPro)
Sed10g0764 254 Gene3D - 97 166 - -
Sed10g0764 254 SUPERFAMILY Homeodomain-like 102 169 IPR009057 -
Sed10g0764 254 SMART HOX_1 103 165 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1789 Sed-Chr7:19034516 Sed10g0764 Sed-Chr10:5393669 8.00E-73 dispersed
Sed10g0764 Sed-Chr10:5393669 Sed13g1053 Sed-Chr13:8970251 1.30E-72 dispersed
Sed10g0764 Sed-Chr10:5393669 Sed14g0964 Sed-Chr14:18805674 3.30E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39743 PF00046 Homeodomain 7.10E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0764 K09338 - csv:101218782 350.903