Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0775 ATGGTTCACTTTATTGAGGTCCCCCAACCCACTTATGCATCTTCTTCCTCCTCCTACCTCCATTTCAAACTAACTCTGCAATTTTTGCAGAAATCAAAACCCATCAAATCCTCCATTTCCTCAATCCTCCAAAAAAAAAAAAAAAAAAAACTACAAAACAAAATGCGTCTTCATCATCTTCATCTTCTTCTTCTCCTCTGTTTTCTGCAACTCCACATTCACCTTTCCCACTCTGCTCATGTTTCCGAGTACAGAGCCCTTCTCTCCCTCAAATCCTCCATCTCCGGCGACCCCAAATCCTCACTCGCTTCCTGGAACGCCACCATCACTCACTGCTCATGGCTCGGCGTCACTTGCGACGCTCGCCGCCGTGTCACCGCCCTCGACCTCTCTGCCCTGGCCCTCTCCGGCACCCTTTCCCCTGATGTTTCATTTCTGAGGTTTCTCACTAATCTTTCTCTTGCTGCCAATGGGTTTTCCGGTCCAATCCCGCTGGAGATTTCTTCCATTTCTTCTCTGCGGTTCCTCAATCTGTCTAATAATGTGTTTGGTGGGTCCATCCCTCCCCGGATTTCCCAGCTTCGGAATCTGCAGGTTCTTGATTTGTATAACAACAATATGACTGGGGATTTCCCCATTGTCGTTACTGAGATGGCGAGTCTCCGCCATTTGCATCTGGGTGGGAATTTCTTCGCCGGGAAAATCCCGCCGGAGATCGGTCGGATGACGTCCTTGGAGTATTTGGCGGTTTCTGGTAACGAACTTGGCGGTTCCATTCCGCCGGAGATCGGAAACTTGACCAACCTTCGTGAGCTTTACATTGGGTACTTCAACGCGTACACCGGTGGGATTCCGACGGAGATTGGGAATTTGTCGGAGTTGGTGAGATTCGACGCGGCGAACTGTGGAATCTCCGGCCGGATTCCACCGGAGATCGGAAAGCTGAAAAACCTCGATACTCTGTTTCTTCAAGTGAATGCTCTATCTGGGCCATTAACGGGGGAGATCGGAGAGTTGAAAAGCTTGAAATCGTTGGATTTGTCGAACAATATGTTCGTGGGTGAGATTCCGATCGCGTTCGCCGAGCTCAAGAACTTGACGCTGTTGAATCTGTTTCGAAACAAGCTTCACGGAGCGATTCCTTCATTTATCGGCGATTTCCCGAAACTGGAAGTGTTGCAGTTATGGGAGAACAATTTCACGGAAGCGATTCCACAGAATTTGGGGAAGAACGGAATGCTTCAGATTTTGGATCTTTCGTCTAACAAGCTCACCGGAACTCTGCCTCCAGATATGTGCTACGGTAATCGCCTTGTATTCCTAATCGCATTGAACAATTTCTTGTTTGGTCCCATCCCAGAATCTCTAGGAAAATGCATTTCGCTTAATCGAATTCGAATGGGGGAAAATTTTCTCAATGGGTCCATTCCAAAGGGGCTTTTAAATCTGCCAAAGCTCACTCAAGTTGAGTTACAGAACAATTACCTCTCCGGCGAGTTTCCGGTCACCGATTCAATCTCAGTGAATCTCGGCCAGATTAGTCTCTCGAACAACCGCCTTTCGGGGGCGATTCCGCCGTCCATCGGCAACTTCTCTGGCGTACAAAAACTACTGCTTGATGGAAACAAATTCTCTGGTCAAATCCCACCTGAGATAGGACGGTTACAGCAACTTTCAAAGATTGATTTCAGTAACAACATGATATCGGGTCCGATCGCGCTGGAGATTAGCCAATGCAAGCTGTTAACCTTCGTCGATCTCAGCCGAAACGAGCTCGACGGCGAAATTCCAAACGAGATCACCAGTATGAGGATATTGAATTACTTGAATCTCTCAAAAAATCACTTGATTGGTGGAATCCCATCTTCCATAGCTAATATGCAGAGCTTAACCTCTGTAGATTTCTCATACAACAATCTATCTGGTTTAGTTCCAGGAAGTGGGCAATTTAGTTACTTCAACTACACATCATTTTTAGGCAATCCAAATCTTTGTGGACCTTATTTAGAACCATGCAAAGATGGGATTGCTAATAGCAATTACCAACAACATGCAAAAGGTCCCTTCTCTGCTTCTCTCAAGCTTCTCCTTGTTATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTTGCTGCAATCATCAAAGCTAGATCATTAAAGAGAGTCAGTGACTCTAAGGCTTGGAAATTAACATCCTTCCAACGCCTAGACTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATAGGAAAAGGTGGGGCTGGGATTGTCTATAAAGGCGCGATGTCGAATGGTGACCAGGTCGCTGTGAAACGCCTCCCCGTGATGAGCCGGGGCTCGTCCCACGACCATGGATTCAATGCGGAGATACAAACTCTTGGGAGGATTCGACACAGACATATTGTGAGGCTGTTGGGTTTTTGTTCAAATCATGAGACTAATCTTTTGATTTACGAGTACATGCCTAATGGGAGCTTGGGGGAAGTTCTTCATGGTAAGAAAGGAGGTCATTTGCAGTGGGATACTAGGTTTAAAATTGCTATTGAATCTGCTAAAGGGCTTTGCTATCTTCATCATGATTGCTCACCGCTCATTGTTCATCGAGATGTGAAATCGAACAACATACTTCTTGATACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTGGCCAAGTTCTTGCAGGATTCTGGCACTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATATATTGCTCCAGAATACGCCTACACACTCAAAGTTGACGAAAAGAGTGACGTATATAGCTTCGGGGTTGTCCTCTTGGAGCTAGTTTGTGGAAGAAAACCTGTCGGAGAATTTGGGGATGGTGTGGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTCGATCCAAGGCTCTCCTCTGTGCCTCTCCACGAAGTACTGCACGTCTTCTACGTCGCAATGCTGTGCGTCGAGGAACAGGCAGTGGAGCGCCCGACAATGCGGGAAGTGATCCAAATCCTTTCGGAGGTTCCACAGCCACCATGTTCGAAACCGGGTGACTCGACACTCCCCATCTCCTCACCACTACCACCACCACCACCAGCCACTGCAGCATTGGATCCTCCAACAGAAACCAAGAACAAGAAGGACGAGCAGCCGGCGGCGGATCTGCTTAGCATTTGA 3216 46.74 MVHFIEVPQPTYASSSSSYLHFKLTLQFLQKSKPIKSSISSILQKKKKKKLQNKMRLHHLHLLLLLCFLQLHIHLSHSAHVSEYRALLSLKSSISGDPKSSLASWNATITHCSWLGVTCDARRRVTALDLSALALSGTLSPDVSFLRFLTNLSLAANGFSGPIPLEISSISSLRFLNLSNNVFGGSIPPRISQLRNLQVLDLYNNNMTGDFPIVVTEMASLRHLHLGGNFFAGKIPPEIGRMTSLEYLAVSGNELGGSIPPEIGNLTNLRELYIGYFNAYTGGIPTEIGNLSELVRFDAANCGISGRIPPEIGKLKNLDTLFLQVNALSGPLTGEIGELKSLKSLDLSNNMFVGEIPIAFAELKNLTLLNLFRNKLHGAIPSFIGDFPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLVFLIALNNFLFGPIPESLGKCISLNRIRMGENFLNGSIPKGLLNLPKLTQVELQNNYLSGEFPVTDSISVNLGQISLSNNRLSGAIPPSIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNMISGPIALEISQCKLLTFVDLSRNELDGEIPNEITSMRILNYLNLSKNHLIGGIPSSIANMQSLTSVDFSYNNLSGLVPGSGQFSYFNYTSFLGNPNLCGPYLEPCKDGIANSNYQQHAKGPFSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRVSDSKAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMSNGDQVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRFKIAIESAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVCGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSVPLHEVLHVFYVAMLCVEEQAVERPTMREVIQILSEVPQPPCSKPGDSTLPISSPLPPPPPATAALDPPTETKNKKDEQPAADLLSI 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5481805 5485675 - Sed0008577.1 Sed10g0775 727279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0775 1071 ProSiteProfiles Protein kinase domain profile. 747 1021 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0775 1071 MobiDBLite consensus disorder prediction 1022 1071 - -
Sed10g0775 1071 SMART LRR_typ_2 242 266 IPR003591 -
Sed10g0775 1071 SMART LRR_typ_2 339 362 IPR003591 -
Sed10g0775 1071 SMART LRR_typ_2 387 411 IPR003591 -
Sed10g0775 1071 SMART LRR_typ_2 627 650 IPR003591 -
Sed10g0775 1071 SMART LRR_typ_2 412 435 IPR003591 -
Sed10g0775 1071 SMART LRR_typ_2 170 194 IPR003591 -
Sed10g0775 1071 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 825 1034 - -
Sed10g0775 1071 Pfam Leucine rich repeat N-terminal domain 82 120 IPR013210 -
Sed10g0775 1071 Gene3D Ribonuclease Inhibitor 436 673 IPR032675 -
Sed10g0775 1071 Pfam Protein kinase domain 749 1016 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0775 1071 Gene3D Ribonuclease Inhibitor 235 330 IPR032675 -
Sed10g0775 1071 MobiDBLite consensus disorder prediction 1035 1050 - -
Sed10g0775 1071 SUPERFAMILY RNI-like 128 434 - -
Sed10g0775 1071 Gene3D Ribonuclease Inhibitor 331 435 IPR032675 -
Sed10g0775 1071 Gene3D Ribonuclease Inhibitor 80 234 IPR032675 -
Sed10g0775 1071 Pfam Leucine Rich Repeat 606 627 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 535 555 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 414 433 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 582 603 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 509 531 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 Pfam Leucine Rich Repeat 196 213 IPR001611 GO:0005515(InterPro)
Sed10g0775 1071 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 66 1021 IPR050647 -
Sed10g0775 1071 SMART serkin_6 747 995 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g0775 1071 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 716 824 - -
Sed10g0775 1071 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 391 676 - -
Sed10g0775 1071 ProSitePatterns Serine/Threonine protein kinases active-site signature. 869 881 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g0775 1071 Gene3D Phosphorylase Kinase; domain 1 713 824 - -
Sed10g0775 1071 SUPERFAMILY Protein kinase-like (PK-like) 738 1018 IPR011009 -
Sed10g0775 1071 SUPERFAMILY L domain-like 356 672 - -
Sed10g0775 1071 Gene3D Transferase(Phosphotransferase) domain 1 825 1026 - -
Sed10g0775 1071 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 140 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2241 Sed-Chr8:36104350 Sed10g0775 Sed-Chr10:5481805 1.10E-87 dispersed
Sed10g0775 Sed-Chr10:5481805 Sed14g0971 Sed-Chr14:18940819 7.70E-26 dispersed
Sed14g0154 Sed-Chr14:1793470 Sed10g0775 Sed-Chr10:5481805 2.00E-51 dispersed
Sed10g0774 Sed-Chr10:5450339 Sed10g0775 Sed-Chr10:5481805 1.40E-09 tandem
Sed01g2484 Sed-Chr1:18576842 Sed10g0775 Sed-Chr10:5481805 5.20E-130 transposed
Sed13g1133 Sed-Chr13:10680182 Sed10g0775 Sed-Chr10:5481805 4.10E-138 transposed
Sed10g0775 Sed-Chr10:5481805 Sed03g1443 Sed-Chr3:9248057 3.90E-70 wgd
Sed10g0775 Sed-Chr10:5481805 Sed05g1525 Sed-Chr5:28939541 1.00E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79836 PF07714 PK_Tyr_Ser-Thr 3.80E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0775 - - - 0.0