Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0797 ATGGAGCTCAGCCAACACAGCTTCATGGAGGAGTTATTATCTTCAACGCCTTGGATTTCTTCACATTCAAATGGGTTCAACGATTTCTTCCAAACCAATTGGAATTTCACCTCTTTTGATGAAAATCCCCAAATGGGTACCTCTGTTTTCCCCCATTTTCCTCAAACCGCCACCGATTTCACCATCGCCGACCAGTACACCCATTTCCTCGAAGGCTTTGCAATGTCGGAGCTGGATTCTTCATCCTACATCAAAAACATCGAAACCCCACCGTTTGTTTCGCCGGAAGAATTGAGTAATCAGACCAGTGGTCACCCGCCGCCGCTGCCGGCGGCGACGGCGGCGGAGGAGGATGGAATTGGTTTGATTGAGAGTGTTTGTAAAGTGGAAGTGGAGCAAATGGGGGTTGTGGAATTGGGGAAAAGAATTAGTAATAAGGCTAAGAAGATTGAAGGGCAGCCATCGAAGAATTTAATGGCGGAGAGGAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTTAGAGCTATTGTTCCTAAAATCAGCAAGATGGATAGAACTTCTATTCTTGGAGATACAATTGATTATGTGAAAGAGTTGATTGAAAGAATCAATAACTTGAAAGAAGAAGAAGTTGGTTTGGATTCAAATCATGTGAGATTGAATGGGATCTTCAAGGAAGGGAAGTCTAATGAAGTTCTACTCAGAAATTCACCTAAGTTCGATGTCGAAAGGAAGGAGAGGGAAACTCAAATCGACATAAGCTGTGCGACAAGGCCAGGATTATTGCTGACGACTGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACACTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCATCTTGTTCAGAGGGAAATGCTCAGAAAACAGTGGCAAGTTCTGATGATATAAAGGAGGCACTGTTCAGAAATGCAGGTTATGGAGGGCAGTGCCTGTAG 978 43.76 MELSQHSFMEELLSSTPWISSHSNGFNDFFQTNWNFTSFDENPQMGTSVFPHFPQTATDFTIADQYTHFLEGFAMSELDSSSYIKNIETPPFVSPEELSNQTSGHPPPLPAATAAEEDGIGLIESVCKVEVEQMGVVELGKRISNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEVGLDSNHVRLNGIFKEGKSNEVLLRNSPKFDVERKERETQIDISCATRPGLLLTTVNTLEALGLEIQHCVISCFNDFSMQASCSEGNAQKTVASSDDIKEALFRNAGYGGQCL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5701655 5703557 - Sed0024299.1 Sed10g0797 727301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0797 325 CDD ACT_UUR-ACR-like 251 292 - -
Sed10g0797 325 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Sed10g0797 325 Pfam Helix-loop-helix DNA-binding domain 159 201 IPR011598 GO:0046983(InterPro)
Sed10g0797 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
Sed10g0797 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 135 320 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed10g0797 325 Gene3D - 153 222 IPR036638 GO:0046983(InterPro)
Sed10g0797 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983(InterPro)
Sed10g0797 325 Coils Coil 198 218 - -
Sed10g0797 325 Pfam Plant bHLH transcription factor, ACT-like domain 244 314 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1530 Sed-Chr5:29050659 Sed10g0797 Sed-Chr10:5701655 3.70E-64 dispersed
Sed05g1531 Sed-Chr5:29050659 Sed10g0797 Sed-Chr10:5701655 2.20E-29 dispersed
Sed10g0797 Sed-Chr10:5701655 Sed14g1019 Sed-Chr14:19770612 6.60E-138 dispersed
Sed10g0797 Sed-Chr10:5701655 Sed03g1438 Sed-Chr3:9170858 1.00E-58 wgd
Sed10g0797 Sed-Chr10:5701655 Sed04g0230 Sed-Chr4:1681461 2.40E-55 wgd
Sed10g0797 Sed-Chr10:5701655 Sed05g1529 Sed-Chr5:29050659 8.70E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39749 PF00010 HLH 2.00E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0797 - - - 0.0