Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0803 | ATGGGTCGAGGAAAAATTGTGATTAAAAGGATCGATAATTCAACAAACAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATCAAAAAGGCTAAAGAGCTTGCAATTCTCTGTGATGCTGATGTTGGACTCATCGTTTTTTCCAGCTCTGGCAAACTCTATGATTTTTCAAATACTAGCATAGAGTCATTAATTGAGAAATACAACAAACGGAAGGAGGAAGAAGAACGGCTGTTGAATCCAGCTATTTCTGATGTTAAGTTATGGCAGAAGGAAGTAGCTGCTCTTGGGCAACAACTACTTAACTTACAAGAGAATAATCGGAAATTAATGGGAGAGCAGCTACATGGTTTGTCAATCAAAGACCTAAACAATCTCGAGGCCCAGTTGGAGTTTAGTTTACAAAGTATCCGAATTAAAAAGGAACAGATATTAAATGATGAAATTAAAGAATTGAGCAGAAAGGGAAGTCTGATGCACCAAGAAAATATAGAGCTGAGGAAGAAAGTAAACCTTTTTTGTCAAGAAAACATGGAATTGCACAGAAAGGTTTATGGGCATGACTCGAGGTTAGCGATGAACATAGTCCATGGAAACACCTTGGTTCCTTACGGTATTATCGCCACCGTCGGGCCAGCTGCCGACGACGCCCTGCGTATGCCTATTCATCTTCAACTCAACCCGCCAGAGCAACAAACTTAG | 705 | 40.28 | MGRGKIVIKRIDNSTNRQVTFSKRRKGLIKKAKELAILCDADVGLIVFSSSGKLYDFSNTSIESLIEKYNKRKEEEERLLNPAISDVKLWQKEVAALGQQLLNLQENNRKLMGEQLHGLSIKDLNNLEAQLEFSLQSIRIKKEQILNDEIKELSRKGSLMHQENIELRKKVNLFCQENMELHRKVYGHDSRLAMNIVHGNTLVPYGIIATVGPAADDALRMPIHLQLNPPEQQT | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5806069 | 5810042 | - | Sed0004053.1 | Sed10g0803 | 727307 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0803 | 234 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 185 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed10g0803 | 234 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed10g0803 | 234 | Pfam | K-box region | 87 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed10g0803 | 234 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | Gene3D | - | 13 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | Coils | Coil | 59 | 79 | - | - | |
Sed10g0803 | 234 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | Coils | Coil | 87 | 114 | - | - | |
Sed10g0803 | 234 | CDD | MADS_MEF2_like | 2 | 71 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed10g0803 | 234 | Coils | Coil | 124 | 144 | - | - | |
Sed10g0803 | 234 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0803 | 234 | SUPERFAMILY | SRF-like | 2 | 79 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0803 | Sed-Chr10:5806069 | Sed13g0384 | Sed-Chr13:2566179 | 3.60E-53 | dispersed | |
Sed14g1573 | Sed-Chr14:23831013 | Sed10g0803 | Sed-Chr10:5806069 | 1.50E-13 | dispersed | |
Sed10g0803 | Sed-Chr10:5806069 | Sed14g1002 | Sed-Chr14:19462453 | 4.30E-24 | wgd | |
Sed10g0803 | Sed-Chr10:5806069 | Sed14g1017 | Sed-Chr14:19692247 | 3.30E-75 | wgd | |
Sed10g0803 | Sed-Chr10:5806069 | Sed03g1412 | Sed-Chr3:8985489 | 6.20E-29 | wgd | |
Sed10g0803 | Sed-Chr10:5806069 | Sed05g1544 | Sed-Chr5:29152538 | 4.70E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39750 | PF01486 | K-box | 7.90E-23 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0803 | K09264 | - | csv:101206453 | 347.051 |