Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0803 ATGGGTCGAGGAAAAATTGTGATTAAAAGGATCGATAATTCAACAAACAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATCAAAAAGGCTAAAGAGCTTGCAATTCTCTGTGATGCTGATGTTGGACTCATCGTTTTTTCCAGCTCTGGCAAACTCTATGATTTTTCAAATACTAGCATAGAGTCATTAATTGAGAAATACAACAAACGGAAGGAGGAAGAAGAACGGCTGTTGAATCCAGCTATTTCTGATGTTAAGTTATGGCAGAAGGAAGTAGCTGCTCTTGGGCAACAACTACTTAACTTACAAGAGAATAATCGGAAATTAATGGGAGAGCAGCTACATGGTTTGTCAATCAAAGACCTAAACAATCTCGAGGCCCAGTTGGAGTTTAGTTTACAAAGTATCCGAATTAAAAAGGAACAGATATTAAATGATGAAATTAAAGAATTGAGCAGAAAGGGAAGTCTGATGCACCAAGAAAATATAGAGCTGAGGAAGAAAGTAAACCTTTTTTGTCAAGAAAACATGGAATTGCACAGAAAGGTTTATGGGCATGACTCGAGGTTAGCGATGAACATAGTCCATGGAAACACCTTGGTTCCTTACGGTATTATCGCCACCGTCGGGCCAGCTGCCGACGACGCCCTGCGTATGCCTATTCATCTTCAACTCAACCCGCCAGAGCAACAAACTTAG 705 40.28 MGRGKIVIKRIDNSTNRQVTFSKRRKGLIKKAKELAILCDADVGLIVFSSSGKLYDFSNTSIESLIEKYNKRKEEEERLLNPAISDVKLWQKEVAALGQQLLNLQENNRKLMGEQLHGLSIKDLNNLEAQLEFSLQSIRIKKEQILNDEIKELSRKGSLMHQENIELRKKVNLFCQENMELHRKVYGHDSRLAMNIVHGNTLVPYGIIATVGPAADDALRMPIHLQLNPPEQQT 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5806069 5810042 - Sed0004053.1 Sed10g0803 727307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0803 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g0803 234 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g0803 234 Pfam K-box region 87 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g0803 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 Gene3D - 13 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 Coils Coil 59 79 - -
Sed10g0803 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 Coils Coil 87 114 - -
Sed10g0803 234 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed10g0803 234 Coils Coil 124 144 - -
Sed10g0803 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0803 234 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0803 Sed-Chr10:5806069 Sed13g0384 Sed-Chr13:2566179 3.60E-53 dispersed
Sed14g1573 Sed-Chr14:23831013 Sed10g0803 Sed-Chr10:5806069 1.50E-13 dispersed
Sed10g0803 Sed-Chr10:5806069 Sed14g1002 Sed-Chr14:19462453 4.30E-24 wgd
Sed10g0803 Sed-Chr10:5806069 Sed14g1017 Sed-Chr14:19692247 3.30E-75 wgd
Sed10g0803 Sed-Chr10:5806069 Sed03g1412 Sed-Chr3:8985489 6.20E-29 wgd
Sed10g0803 Sed-Chr10:5806069 Sed05g1544 Sed-Chr5:29152538 4.70E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39750 PF01486 K-box 7.90E-23 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0803 K09264 - csv:101206453 347.051