Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0804 ATGGAGAAAAAAGGAAAAAGAAGAAGCCAACAGCTTTGGAATTGGAAGCTTGAGTTCTCAGCCATGGCGGTCCTTTTCTTTTTCTTCACTTTATCAAACGCCAAAGCACAACAACAAGATTCATCTCAACGAAAAATAGTAAGAAATTTGGCCGAGAACAACAACTCAATGATGGCAGCCGACGTAAAGCTTGAATTGCAGAATCATGGACAGGTGGTAATGGACAATGGCTTAATCCGAGTTACCTTTTCTCGTCCAGAAGGCAATGTTATTGGCATAAAATACAATAATATGGATAATCTACTCGAATTTCACAACCCTCACTACAATAGAGGATATTGGGACGTTGTTTGGAACCGCCCTAATCAACGCAGCGCCATTGACGGAGTAAGGGCAACGGATTTCAAAGTGATTACAGCTACAAGTGATCAAATAGAGCTTTCATTTACCAAAAATTGGGATCCTTCCGACCATTCAACCCTCCCTATGAACATGGACAAGAGGTTTATTTTGCGGCGAGGGGATTCTGGGTTCTATGCATACGGCATATTTGAACGGCTGGATGGATGGCCTCAAGTTGACGTGGATCAGATCAGAATGGTCTACAAAGTCCAAAGACAAAAATTTCATTACATGGCGATATCGGACGATAGACAGAGGATCATGCCGACGCAACGAGACCGGATGAGCGGGCAGCCTCTGGCTTATCCGGAGGCGGTTCACTTAACCCAACCCATGAACCCCAACCTAAAAGGAGAGGTGGACGATAAGTACCAGTACTCTCAAGAGAATAGGGAGAACAAGGTTCATGGATGGGTTTCAAGGGACCCACACGTGGGGTTCTGGATGATCACGCCCAGTCACGAGTTCCGTACGGCGGGCCCACTCAAACAAGAGCTCACCTCCCACGTTGGCCCCACCACTCTCTGCATGTTTGCGAGTGATCATTACGCGGGTAAAGATGTTTCGTTGAGATTTGGAGAGGGAGAGGCATGGAAGAAGGTTTTGGGACCGGTCTTCGTTTATCTCAACTCCGACCCGACCGACACTCCAACCCCCGGTTCGTTATGGGAAGATGCTAAAACCCAGATGAGGATGGAAACGAGCAAGTGGCCGTACAGCTTTGTTGAGTCGAAAGAATATCCAACCTCGGACGAAAGAGGTAGCGTGAGTGGTCAATTAACGGTCCGAGATAGATACGCTGAGAAGTCGCTGATGTGGGCCGATTCTGCGTTTGTGGGCCTTGCAGCTCCCGGGGAATTGGGGTCTTGGCAAACAGAGAGCAAGGGATATCAATTCTGGACACAAGCAGACCAAAATGGACATTTCACAATTGAAAACATAAGGCCAGGAATCTACAATCTCTACGCATGGGTTCCCAACGTAATCGGCGATTACAAATACAACACCCAGATCATCGTCACATCAGCTAATTCCACAAGTCTCGGTCTGCTGATGTACGACCCTCCGAGGCGAGGCCCAACTCTATGGGAAATCGGCATCCCAGACCGGAAAGCGGCCGAGTTTTATATCCCGAATCCCGAACCGAACCTCATGAACCACCTTTACAACAATTCCAAAATCCAATCCCAAGATAAGTTTCGTGAATACGGTCTTTGGCAACGCTATGCCGATTTATACCCCGACCGGGATCTAGTCTTCAATGTCGACACCGACGACTACCGTAACCGCTGGTTCTACGCTCACGTGACAAGAGCCAGCGGTCACAGGGACTACCGACCAACCACGTGGCAGATTGTGTTTCGTCTTAACAAACAAACCGGAACCTATACGCTCCGGTTGGCATTGGCCTCGTCTACTCAAGCCGTGGTCGATATCCGGTTCAACAACCCTTTCGCCGAACAACCCCATTTCACGACCGGGTATTGGAATTCCGGTAAAGATAACGCCATTGCTAGACATGGCATTCATGGGCTTTATTGGCTGTTTAACTTTGACGTTCCCAGTTATTATTTGATGAACGGTGAAAATATCATTTATCTTACACAGAGAAGACATGCAGGGCCTTTTCAAGGAGTTATGTACGACTACATACGATTCGAAGGTGTAGAGTAA 2076 47.59 MEKKGKRRSQQLWNWKLEFSAMAVLFFFFTLSNAKAQQQDSSQRKIVRNLAENNNSMMAADVKLELQNHGQVVMDNGLIRVTFSRPEGNVIGIKYNNMDNLLEFHNPHYNRGYWDVVWNRPNQRSAIDGVRATDFKVITATSDQIELSFTKNWDPSDHSTLPMNMDKRFILRRGDSGFYAYGIFERLDGWPQVDVDQIRMVYKVQRQKFHYMAISDDRQRIMPTQRDRMSGQPLAYPEAVHLTQPMNPNLKGEVDDKYQYSQENRENKVHGWVSRDPHVGFWMITPSHEFRTAGPLKQELTSHVGPTTLCMFASDHYAGKDVSLRFGEGEAWKKVLGPVFVYLNSDPTDTPTPGSLWEDAKTQMRMETSKWPYSFVESKEYPTSDERGSVSGQLTVRDRYAEKSLMWADSAFVGLAAPGELGSWQTESKGYQFWTQADQNGHFTIENIRPGIYNLYAWVPNVIGDYKYNTQIIVTSANSTSLGLLMYDPPRRGPTLWEIGIPDRKAAEFYIPNPEPNLMNHLYNNSKIQSQDKFREYGLWQRYADLYPDRDLVFNVDTDDYRNRWFYAHVTRASGHRDYRPTTWQIVFRLNKQTGTYTLRLALASSTQAVVDIRFNNPFAEQPHFTTGYWNSGKDNAIARHGIHGLYWLFNFDVPSYYLMNGENIIYLTQRRHAGPFQGVMYDYIRFEGVE 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5819657 5827256 + Sed0020952.1 Sed10g0804 727308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0804 691 SUPERFAMILY Galactose-binding domain-like 493 688 IPR008979 -
Sed10g0804 691 FunFam Rhamnogalacturonate lyase B 383 482 - -
Sed10g0804 691 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Sed10g0804 691 SUPERFAMILY Galactose mutarotase-like 72 350 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Sed10g0804 691 Gene3D - 383 483 - -
Sed10g0804 691 Pfam Rhamnogalacturonate lyase family 55 254 IPR010325 -
Sed10g0804 691 CDD RGL4_M 386 483 IPR029413 -
Sed10g0804 691 CDD RGL4_C 497 688 - -
Sed10g0804 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 689 IPR051850 -
Sed10g0804 691 CDD RGL4_N 71 349 - -
Sed10g0804 691 Gene3D - 493 687 - -
Sed10g0804 691 SUPERFAMILY Starch-binding domain-like 384 484 IPR013784 GO:0030246(InterPro)
Sed10g0804 691 Pfam Polysaccharide lyase family 4, domain III 495 687 IPR029411 -
Sed10g0804 691 Gene3D - 65 350 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1800 Sed-Chr7:20184465 Sed10g0804 Sed-Chr10:5819657 4.30E-224 dispersed
Sed07g1801 Sed-Chr7:20184725 Sed10g0804 Sed-Chr10:5819657 4.30E-224 dispersed
Sed10g0804 Sed-Chr10:5819657 Sed13g1527 Sed-Chr13:20423355 1.80E-206 dispersed
Sed10g0804 Sed-Chr10:5819657 Sed14g1016 Sed-Chr14:19664842 2.30E-305 wgd
Sed10g0804 Sed-Chr10:5819657 Sed05g1549 Sed-Chr5:29209913 1.00E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0804 K18195 - csv:101206696 1012.29