Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0805 ATGGCGAAATCTGCAGATCAAGAACATCCTAAGAAGGCCTTTGGATGGGCGGCCAGAGACAATTCCGGCGTTCTTTCTCCTTTCCATTTCTCCAGAAGAGAAACAGGGGAAAAGGATGTGGCATTCAAGGTTCTTTACTGTGGGATTTGCCATTCTGATCTTCACATGGTGAAAAATGAATGGGGCAGTACCATTTACCCTATTGTTCCTGGGCATGAAATCGTGGGCGAGGTAACAGAAGTTGGAAGCAAAGTAGAGAAATTCAAGGTGGGAGACAAAGTTGGCGTAGGATGTATGGTCGATTCCTGCCGCTCCTGCGATAACTGTTCCAACGACCTTGAGAACTATTGCCCCAAAATGATTCTCACTTACTCTTCCAAAGTCTCCGATGGGAGTGTTACCTATGGAGGCTACTCCGACTCCATGGTTGCAGATGAACATTTCATAGTTCGCATTCCCGACAGCATCCCACTGCATGCCGGGGCTCCTCTACTGTGTGCTGGCATCACAGTCTACAGCCCCTTGAGATACTACGGCCTTGACAAGCCCGGTATGCAAATTGGGGTGGTTGGCCTTGGTGGACTTGGCCATGTTGCCGTCAAATTTGCCAAGGCCTTTGGTGCTAAGGTTACTGTGATTAGTACCTCTCCTAACAAGAAGCTGGAGGCAATCAATCGTCTTGGGGCTGATTCATTCTTGGTCAGCCGCGACCAAGAGGAAATGCAGGCTGCTAGAGGAACATTGGATGGTATTATTGACACAGTCTCTGCTATACATCCCCTCCTTCCTCTGCTTTCCCTTATCAAATCCCATGGAAAGCTTGTTATGGTTGGTGCTCCAGAGAAGCCACTCGAGCTCCCAGCCTACGCTCTTATCGGGGGTAGGAAAACAATGGCGGGTAGTTGCATTGGAGGGATGAAGGAAACACAAGAGATGATGGACTTTGCAGCGAAACACAACATAATTGCGGACGTCGAGGTGATCCCAGTCACCGACGTCAACACCGCCATGGAACGGATGCTGAAACAAGATGTCAAGTATCGATTCGTCATCGACATCGCTAACACCATGAAGCCTAGCAACTAG 1086 49.08 MAKSADQEHPKKAFGWAARDNSGVLSPFHFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGSTIYPIVPGHEIVGEVTEVGSKVEKFKVGDKVGVGCMVDSCRSCDNCSNDLENYCPKMILTYSSKVSDGSVTYGGYSDSMVADEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGMQIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKLEAINRLGADSFLVSRDQEEMQAARGTLDGIIDTVSAIHPLLPLLSLIKSHGKLVMVGAPEKPLELPAYALIGGRKTMAGSCIGGMKETQEMMDFAAKHNIIADVEVIPVTDVNTAMERMLKQDVKYRFVIDIANTMKPSN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5827449 5831728 - Sed0013918.1 Sed10g0805 727309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0805 361 Gene3D - 16 353 - -
Sed10g0805 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Sed10g0805 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Sed10g0805 361 Gene3D - 167 323 - -
Sed10g0805 361 SUPERFAMILY GroES-like 19 184 IPR011032 -
Sed10g0805 361 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Sed10g0805 361 Pfam Alcohol dehydrogenase GroES-like domain 37 154 IPR013154 -
Sed10g0805 361 FunFam Uncharacterized protein 16 166 - -
Sed10g0805 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Sed10g0805 361 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Sed10g0805 361 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Sed10g0805 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0637 Sed-Chr5:4650183 Sed10g0805 Sed-Chr10:5827449 4.20E-98 dispersed
Sed05g0638 Sed-Chr5:4650183 Sed10g0805 Sed-Chr10:5827449 2.80E-79 dispersed
Sed05g2604 Sed-Chr5:37710278 Sed10g0805 Sed-Chr10:5827449 5.90E-100 dispersed
Sed10g0805 Sed-Chr10:5827449 Sed14g1015 Sed-Chr14:19661056 1.80E-149 dispersed
Sed01g0043 Sed-Chr1:454981 Sed10g0805 Sed-Chr10:5827449 1.30E-142 transposed
Sed03g0321 Sed-Chr3:1947728 Sed10g0805 Sed-Chr10:5827449 3.10E-08 transposed
Sed13g2160 Sed-Chr13:26172324 Sed10g0805 Sed-Chr10:5827449 8.90E-120 transposed
Sed14g0049 Sed-Chr14:639610 Sed10g0805 Sed-Chr10:5827449 2.40E-26 transposed
Sed10g0805 Sed-Chr10:5827449 Sed14g1014 Sed-Chr14:19661056 2.00E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0805 K23232 - csv:101222715 659.062