Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0811 ATGGGAAGTCAAAGTCAAGATGAATTAATAACGCAAAAGAAGATGCTTTCGCCTCAGCCTGGAAGATTTGAAGATCGTGAAGACCTCATCAAATATGTTCGTGATTTTGGTGCAGATCAGGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGTGTGTACCGTAACAGGCGTAAGATTGACGAGAGTCGGCGCAAAAGGAAAGCAAGCTCACGCTTGATAAATTGCCCGTTTGAAGCAGTTGGCAAGAAGGAAGATGATACCTGGATTCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAATGACATGTCAGAGCATCCTTACAGTCGTCGTTTTACTGAGGATGAAGTGAGGCAAATAAAAATGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCCCTCAAGCAACATAATCCAGATCTGCAGTCAACACCAAGGCATCTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAACAAATTTCAAATCGTGGAGTCCTAATAGTTCAGTTCCCGCAAATAGTAGTCATGTCATTGAGGATGCAGTCAAGCAAAAGCATCAGCTGGTTCCGAATTTAATTGGAGGGGAATTCTTGGATTCACGCGACTGTCCAGTGGTTGAAGTTACTAATCCAGCGACACAAGAAGTTGTTTCTCATGTTCCTTTAACAACCTATGAAGAGTTTAAGGCCGCAGTTAATGCAGCCAAACGAGCTTTTCCCTCATGGAAAAACACACCGATTTCTACTCGTCAACATGTTATGTTCAAGTTTCAAGAGCTCATCATCAGGGACATGGATAAGCTTGTGATGAATATTGTCTCAGAACAGGGCAAACCATTAAAGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAATATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCGTAATGCATCGGATGGAATTGATTACCACTGCATTCGTGAACCAATAGGTGTTTGTGCTGGGATATGCTCTTTTAACCATTCAGCAACAATTTCTTTATGGATGTTTCCAATTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAGAACCCAGGGGCTTCATTGTTGCTAGCTGCATTAGCAGTGGAGGCTGGTTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCACGATATGATTAACTTCATATGTGACGATGAGGACATAAAAGCTATATCTATTGCCAGTTCGAGTTCGGCTGAAAAGAACATATATGCTAGGGCGGCTGCTACTGGAAAAAAAGTTCAGTCAAATTTAGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTGCTTTAAATGCTCTTGTTGATGCGGGATTTGGTACTGCTCGACAGACATGTATGGCTATCAACATTGTTATCTCTGTTGGGAGTTCAGTTCTATGGGAAGAAAAACTTGTGGAATATGCCAAAGCACTTAAAGTGAATGTGGGGACAGACCCCCTTGCTTACCTTGGTCCTGTAATCACCAAAGAGGTGAAAGATCATCTTTGTAGATTAGTTCGAAGTGGCATTGACAGTGGTGCTAGACTTCTGCTTGACGGTAGAGATATTGTGGTCCCAGGATACGAAAATGGGAATTTTGTTGGTCCTACTATTTTATCTGATGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGCAGGCTGACAACCTAGAGGAGGCTATAGCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGTGTATATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTAGGAATGGTTGGTATAAATGTTGCTGTTCCAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGCCTGGAATTTTACACTCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTTACCAGATATTGGGGTCTCAATGGCGATTCCTTCACCATCTGAGAGACATTTGAGAGCTCGTGCTACACCTTCAATGTTGCTTTCAACATCTGAGAAAGATTCACCTGGTGGGCAGCACAGAAGTTTACACCCATTGCCTTCCACATCTGATGCTGTACTGCTGGCAAACCCTCAAATATCTCAGACAGATTTAGTCAATGAAAGAGCCACCGCCTCTCCGCCAACTCCAGAGAGGGATTTGCACGGTCGAGGACTCTCCCTGATTTCTAATTTGTCATCAGCGGGGGATATATCCAACCATGATTTGTCTCCTGCTATGCCTTCGACAGGTGATAGAGATTTAGCTAGCCAAGCTATGTCATCTGAGAGACTCTACATTCCTCAGAAATCTCATTGGAGTGAAGTCCAGCGAGCTGATTCATTTCCTTCCACTTCTGAGAGGACCCATGTGCCATCTTCGCTGACAAATAGCATAATAGCGCAGACATCTCGAACAACTCATCCTGCTTTGGTCTTACCTGCAGAGGCGTTATATGCGCCTACATCTAGTGACAGTATTTGTCAGATAATCCCTGGAAATGATAGCACAGTTCCATCACGAAGAATCGATAGCAAGTGTCACTCATCCGAACGGGGACACATGCTAGCAACTTCCCATTTGAACGACAGTATGAATCAAACATTGCAGGCAACTGAAACTTCCCTGTTCTCTTCTTCAGCAAGGCAATATATGGCTCCCGCTCATAGAAGCCAATTAAGCTTGGCTTCTCATATCGATATTTCTTCGCAATTAACGTCGGATAGACTGTATATTTCTCCATTGTCTCATAGAAACGAATGTATGCCACTGAAATCGGAATGGTTATGCATTCCGACGTCGGCCGTAACTCAGAGAATGTATCTGCAAGATTCAATAGTTTCAGCAGATGAATTTCAAGGCCAAGAAGCATCATTGACATTGCATGCATCTCAAAGAATATGA 3009 42.74 MGSQSQDELITQKKMLSPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESRRKRKASSRLINCPFEAVGKKEDDTWILTIKNGDHNHEPLNDMSEHPYSRRFTEDEVRQIKMMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSETNFKSWSPNSSVPANSSHVIEDAVKQKHQLVPNLIGGEFLDSRDCPVVEVTNPATQEVVSHVPLTTYEEFKAAVNAAKRAFPSWKNTPISTRQHVMFKFQELIIRDMDKLVMNIVSEQGKPLKDAQDDIICGLEVVKYACGLATMQMGEFIRNASDGIDYHCIREPIGVCAGICSFNHSATISLWMFPIAVTCGNTFVLKPCEKNPGASLLLAALAVEAGLPDGVLNIVHGTHDMINFICDDEDIKAISIASSSSAEKNIYARAAATGKKVQSNLGGKSHAIIMPDANMEAALNALVDAGFGTARQTCMAINIVISVGSSVLWEEKLVEYAKALKVNVGTDPLAYLGPVITKEVKDHLCRLVRSGIDSGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFFGPVLLCMQQADNLEEAIAIVNRNKNRNGASIFTTSGVYARKFQSEVEVGMVGINVAVPVPLPSSFNDKAGLEFYTQLKRVAQQWKNLPDIGVSMAIPSPSERHLRARATPSMLLSTSEKDSPGGQHRSLHPLPSTSDAVLLANPQISQTDLVNERATASPPTPERDLHGRGLSLISNLSSAGDISNHDLSPAMPSTGDRDLASQAMSSERLYIPQKSHWSEVQRADSFPSTSERTHVPSSLTNSIIAQTSRTTHPALVLPAEALYAPTSSDSICQIIPGNDSTVPSRRIDSKCHSSERGHMLATSHLNDSMNQTLQATETSLFSSSARQYMAPAHRSQLSLASHIDISSQLTSDRLYISPLSHRNECMPLKSEWLCIPTSAVTQRMYLQDSIVSADEFQGQEASLTLHASQRI 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5865051 5889142 + Sed0017008.3 Sed10g0811 727315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0811 1002 Pfam Transcription factor AFT 23 112 IPR014842 GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro)
Sed10g0811 1002 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 455 655 - -
Sed10g0811 1002 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 455 650 IPR016163 GO:0016620(InterPro)
Sed10g0811 1002 SUPERFAMILY ALDH-like 206 675 IPR016161 GO:0016491(InterPro)
Sed10g0811 1002 MobiDBLite consensus disorder prediction 703 725 - -
Sed10g0811 1002 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 212 673 IPR010061 GO:0004491(InterPro)
Sed10g0811 1002 MobiDBLite consensus disorder prediction 1 22 - -
Sed10g0811 1002 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 229 454 IPR016162 GO:0016491(InterPro)
Sed10g0811 1002 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 686 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Sed10g0811 1002 MobiDBLite consensus disorder prediction 738 758 - -
Sed10g0811 1002 Pfam Aldehyde dehydrogenase family 222 647 IPR015590 GO:0016491(InterPro)
Sed10g0811 1002 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 214 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0811 Sed-Chr10:5865051 Sed12g1906 Sed-Chr12:30211078 2.50E-39 dispersed
Sed10g0810 Sed-Chr10:5863751 Sed10g0811 Sed-Chr10:5865051 0.00E+00 tandem
Sed10g0811 Sed-Chr10:5865051 Sed10g0812 Sed-Chr10:5867089 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0811 K00140 - csv:101207178 1519.21