Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0811 | ATGGGAAGTCAAAGTCAAGATGAATTAATAACGCAAAAGAAGATGCTTTCGCCTCAGCCTGGAAGATTTGAAGATCGTGAAGACCTCATCAAATATGTTCGTGATTTTGGTGCAGATCAGGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGTGTGTACCGTAACAGGCGTAAGATTGACGAGAGTCGGCGCAAAAGGAAAGCAAGCTCACGCTTGATAAATTGCCCGTTTGAAGCAGTTGGCAAGAAGGAAGATGATACCTGGATTCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAATGACATGTCAGAGCATCCTTACAGTCGTCGTTTTACTGAGGATGAAGTGAGGCAAATAAAAATGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCCCTCAAGCAACATAATCCAGATCTGCAGTCAACACCAAGGCATCTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAACAAATTTCAAATCGTGGAGTCCTAATAGTTCAGTTCCCGCAAATAGTAGTCATGTCATTGAGGATGCAGTCAAGCAAAAGCATCAGCTGGTTCCGAATTTAATTGGAGGGGAATTCTTGGATTCACGCGACTGTCCAGTGGTTGAAGTTACTAATCCAGCGACACAAGAAGTTGTTTCTCATGTTCCTTTAACAACCTATGAAGAGTTTAAGGCCGCAGTTAATGCAGCCAAACGAGCTTTTCCCTCATGGAAAAACACACCGATTTCTACTCGTCAACATGTTATGTTCAAGTTTCAAGAGCTCATCATCAGGGACATGGATAAGCTTGTGATGAATATTGTCTCAGAACAGGGCAAACCATTAAAGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAATATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCGTAATGCATCGGATGGAATTGATTACCACTGCATTCGTGAACCAATAGGTGTTTGTGCTGGGATATGCTCTTTTAACCATTCAGCAACAATTTCTTTATGGATGTTTCCAATTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAGAACCCAGGGGCTTCATTGTTGCTAGCTGCATTAGCAGTGGAGGCTGGTTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCACGATATGATTAACTTCATATGTGACGATGAGGACATAAAAGCTATATCTATTGCCAGTTCGAGTTCGGCTGAAAAGAACATATATGCTAGGGCGGCTGCTACTGGAAAAAAAGTTCAGTCAAATTTAGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTGCTTTAAATGCTCTTGTTGATGCGGGATTTGGTACTGCTCGACAGACATGTATGGCTATCAACATTGTTATCTCTGTTGGGAGTTCAGTTCTATGGGAAGAAAAACTTGTGGAATATGCCAAAGCACTTAAAGTGAATGTGGGGACAGACCCCCTTGCTTACCTTGGTCCTGTAATCACCAAAGAGGTGAAAGATCATCTTTGTAGATTAGTTCGAAGTGGCATTGACAGTGGTGCTAGACTTCTGCTTGACGGTAGAGATATTGTGGTCCCAGGATACGAAAATGGGAATTTTGTTGGTCCTACTATTTTATCTGATGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGCAGGCTGACAACCTAGAGGAGGCTATAGCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGTGTATATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTAGGAATGGTTGGTATAAATGTTGCTGTTCCAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGCCTGGAATTTTACACTCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTTACCAGATATTGGGGTCTCAATGGCGATTCCTTCACCATCTGAGAGACATTTGAGAGCTCGTGCTACACCTTCAATGTTGCTTTCAACATCTGAGAAAGATTCACCTGGTGGGCAGCACAGAAGTTTACACCCATTGCCTTCCACATCTGATGCTGTACTGCTGGCAAACCCTCAAATATCTCAGACAGATTTAGTCAATGAAAGAGCCACCGCCTCTCCGCCAACTCCAGAGAGGGATTTGCACGGTCGAGGACTCTCCCTGATTTCTAATTTGTCATCAGCGGGGGATATATCCAACCATGATTTGTCTCCTGCTATGCCTTCGACAGGTGATAGAGATTTAGCTAGCCAAGCTATGTCATCTGAGAGACTCTACATTCCTCAGAAATCTCATTGGAGTGAAGTCCAGCGAGCTGATTCATTTCCTTCCACTTCTGAGAGGACCCATGTGCCATCTTCGCTGACAAATAGCATAATAGCGCAGACATCTCGAACAACTCATCCTGCTTTGGTCTTACCTGCAGAGGCGTTATATGCGCCTACATCTAGTGACAGTATTTGTCAGATAATCCCTGGAAATGATAGCACAGTTCCATCACGAAGAATCGATAGCAAGTGTCACTCATCCGAACGGGGACACATGCTAGCAACTTCCCATTTGAACGACAGTATGAATCAAACATTGCAGGCAACTGAAACTTCCCTGTTCTCTTCTTCAGCAAGGCAATATATGGCTCCCGCTCATAGAAGCCAATTAAGCTTGGCTTCTCATATCGATATTTCTTCGCAATTAACGTCGGATAGACTGTATATTTCTCCATTGTCTCATAGAAACGAATGTATGCCACTGAAATCGGAATGGTTATGCATTCCGACGTCGGCCGTAACTCAGAGAATGTATCTGCAAGATTCAATAGTTTCAGCAGATGAATTTCAAGGCCAAGAAGCATCATTGACATTGCATGCATCTCAAAGAATATGA | 3009 | 42.74 | MGSQSQDELITQKKMLSPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESRRKRKASSRLINCPFEAVGKKEDDTWILTIKNGDHNHEPLNDMSEHPYSRRFTEDEVRQIKMMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSETNFKSWSPNSSVPANSSHVIEDAVKQKHQLVPNLIGGEFLDSRDCPVVEVTNPATQEVVSHVPLTTYEEFKAAVNAAKRAFPSWKNTPISTRQHVMFKFQELIIRDMDKLVMNIVSEQGKPLKDAQDDIICGLEVVKYACGLATMQMGEFIRNASDGIDYHCIREPIGVCAGICSFNHSATISLWMFPIAVTCGNTFVLKPCEKNPGASLLLAALAVEAGLPDGVLNIVHGTHDMINFICDDEDIKAISIASSSSAEKNIYARAAATGKKVQSNLGGKSHAIIMPDANMEAALNALVDAGFGTARQTCMAINIVISVGSSVLWEEKLVEYAKALKVNVGTDPLAYLGPVITKEVKDHLCRLVRSGIDSGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFFGPVLLCMQQADNLEEAIAIVNRNKNRNGASIFTTSGVYARKFQSEVEVGMVGINVAVPVPLPSSFNDKAGLEFYTQLKRVAQQWKNLPDIGVSMAIPSPSERHLRARATPSMLLSTSEKDSPGGQHRSLHPLPSTSDAVLLANPQISQTDLVNERATASPPTPERDLHGRGLSLISNLSSAGDISNHDLSPAMPSTGDRDLASQAMSSERLYIPQKSHWSEVQRADSFPSTSERTHVPSSLTNSIIAQTSRTTHPALVLPAEALYAPTSSDSICQIIPGNDSTVPSRRIDSKCHSSERGHMLATSHLNDSMNQTLQATETSLFSSSARQYMAPAHRSQLSLASHIDISSQLTSDRLYISPLSHRNECMPLKSEWLCIPTSAVTQRMYLQDSIVSADEFQGQEASLTLHASQRI | 1002 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5865051 | 5889142 | + | Sed0017008.3 | Sed10g0811 | 727315 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0811 | 1002 | Pfam | Transcription factor AFT | 23 | 112 | IPR014842 | GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro) | |
Sed10g0811 | 1002 | FunFam | Methylmalonate-semialdehyde dehydrogenase (Acylating) | 455 | 655 | - | - | |
Sed10g0811 | 1002 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 455 | 650 | IPR016163 | GO:0016620(InterPro) | |
Sed10g0811 | 1002 | SUPERFAMILY | ALDH-like | 206 | 675 | IPR016161 | GO:0016491(InterPro) | |
Sed10g0811 | 1002 | MobiDBLite | consensus disorder prediction | 703 | 725 | - | - | |
Sed10g0811 | 1002 | NCBIfam | CoA-acylating methylmalonate-semialdehyde dehydrogenase | 212 | 673 | IPR010061 | GO:0004491(InterPro) | |
Sed10g0811 | 1002 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Sed10g0811 | 1002 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 229 | 454 | IPR016162 | GO:0016491(InterPro) | |
Sed10g0811 | 1002 | PANTHER | MALONATE-SEMIALDEHYDE DEHYDROGENASE | 15 | 686 | IPR010061 | GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER) | |
Sed10g0811 | 1002 | MobiDBLite | consensus disorder prediction | 738 | 758 | - | - | |
Sed10g0811 | 1002 | Pfam | Aldehyde dehydrogenase family | 222 | 647 | IPR015590 | GO:0016491(InterPro) | |
Sed10g0811 | 1002 | FunFam | Methylmalonate-semialdehyde dehydrogenase [acylating] | 214 | 461 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0811 | Sed-Chr10:5865051 | Sed12g1906 | Sed-Chr12:30211078 | 2.50E-39 | dispersed | |
Sed10g0810 | Sed-Chr10:5863751 | Sed10g0811 | Sed-Chr10:5865051 | 0.00E+00 | tandem | |
Sed10g0811 | Sed-Chr10:5865051 | Sed10g0812 | Sed-Chr10:5867089 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0811 | K00140 | - | csv:101207178 | 1519.21 |