Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0819 | ATGGCGAAGGAGAAAATCCAGATCCGGAAGATCGATAACGTGACGGCGAGGCAGGTTACGTTCTCCAAGCGCCGACGGGGACTGTTCAAGAAAGCGAAGGAGTTATCCGTTTTGTGCGACGCCGATGTCGCTCTTATCATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGTTCAAGCATAAAGGGAATTATAGAAAGGCATAATTTGCATTCCAAGAACCTTCAGAAATTGGAACAGCCGTCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACTCGATTAAACAAGGAAATTGCAGATAAAACCCATCAGCTAAGGCAGATGAGGGGTGAGGAGCTCCAATCGCTGAATATAGAGGAACTGCAACAGTTAGAGAAGTCACTAGAGACTGGATTGAGCCGTGTGATGGAGAGAAAGGGCGAAAAGCTCGTGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGTTGCTGGAAGAGAATAAGCGACTGAAACAACAAGCAGCGAAGATTAATCGCGTGGTCAGGCGCATCGGCATAGAGCCCGAGATCTTGGTCGTGGAAGATGACCAGTCGTCGAGCTCGGCAACCGAAGCTTGTGTCTCTAACTCCAATGGCCACCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGTTGA | 690 | 48.7 | MAKEKIQIRKIDNVTARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSIKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQSLNIEELQQLEKSLETGLSRVMERKGEKLVKEITDLQRKSAELLEENKRLKQQAAKINRVVRRIGIEPEILVVEDDQSSSSATEACVSNSNGHPQDLESSDTSLKLGLPYSG | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5951273 | 5956914 | - | Sed0027590.2 | Sed10g0819 | 727323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0819 | 229 | Coils | Coil | 94 | 114 | - | - | |
Sed10g0819 | 229 | MobiDBLite | consensus disorder prediction | 191 | 229 | - | - | |
Sed10g0819 | 229 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed10g0819 | 229 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed10g0819 | 229 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | Coils | Coil | 143 | 177 | - | - | |
Sed10g0819 | 229 | Pfam | K-box region | 91 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed10g0819 | 229 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
Sed10g0819 | 229 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed10g0819 | 229 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 207 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed10g0819 | 229 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0819 | Sed-Chr10:5951273 | Sed14g1002 | Sed-Chr14:19462453 | 3.60E-90 | dispersed | |
Sed10g0818 | Sed-Chr10:5951273 | Sed10g0819 | Sed-Chr10:5951273 | 2.00E-117 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39753 | PF01486 | K-box | 2.80E-17 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0819 | - | - | - | 0.0 |