Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0819 ATGGCGAAGGAGAAAATCCAGATCCGGAAGATCGATAACGTGACGGCGAGGCAGGTTACGTTCTCCAAGCGCCGACGGGGACTGTTCAAGAAAGCGAAGGAGTTATCCGTTTTGTGCGACGCCGATGTCGCTCTTATCATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGTTCAAGCATAAAGGGAATTATAGAAAGGCATAATTTGCATTCCAAGAACCTTCAGAAATTGGAACAGCCGTCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACTCGATTAAACAAGGAAATTGCAGATAAAACCCATCAGCTAAGGCAGATGAGGGGTGAGGAGCTCCAATCGCTGAATATAGAGGAACTGCAACAGTTAGAGAAGTCACTAGAGACTGGATTGAGCCGTGTGATGGAGAGAAAGGGCGAAAAGCTCGTGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGTTGCTGGAAGAGAATAAGCGACTGAAACAACAAGCAGCGAAGATTAATCGCGTGGTCAGGCGCATCGGCATAGAGCCCGAGATCTTGGTCGTGGAAGATGACCAGTCGTCGAGCTCGGCAACCGAAGCTTGTGTCTCTAACTCCAATGGCCACCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGCTGCCGTATTCCGGTTGA 690 48.7 MAKEKIQIRKIDNVTARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSIKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQSLNIEELQQLEKSLETGLSRVMERKGEKLVKEITDLQRKSAELLEENKRLKQQAAKINRVVRRIGIEPEILVVEDDQSSSSATEACVSNSNGHPQDLESSDTSLKLGLPYSG 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5951273 5956914 - Sed0027590.2 Sed10g0819 727323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0819 229 Coils Coil 94 114 - -
Sed10g0819 229 MobiDBLite consensus disorder prediction 191 229 - -
Sed10g0819 229 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g0819 229 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed10g0819 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 Coils Coil 143 177 - -
Sed10g0819 229 Pfam K-box region 91 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed10g0819 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 FunFam Transcription factor, MADS-box 13 83 - -
Sed10g0819 229 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed10g0819 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed10g0819 229 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0819 Sed-Chr10:5951273 Sed14g1002 Sed-Chr14:19462453 3.60E-90 dispersed
Sed10g0818 Sed-Chr10:5951273 Sed10g0819 Sed-Chr10:5951273 2.00E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39753 PF01486 K-box 2.80E-17 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0819 - - - 0.0