Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0826 ATGGCGGATAGTTTTTACTGTACAGAGAATGCCAGCACTTGTTTTGATGGGTTTGATTGTTTGAATGAATTCGATCGAAGAAGAACCCGAGACCCGAATGTTGAGAGTTTCGGATCCGGGAATTTGATGAGTGAAGAGAGGATTATAGGAATGGTTGAGAAAGAAATTGACCATTTGCCTAGACATGATTATCTTAAGAGAATCCGTTGTGGGGATTTGGATTTGAAGTTTAGAAAAGAGGCTGTTGATTGGATTTGGAAGGCTCATTCTCATTATAGTTTTGGACCATTGAGTTTTTGTTTATCTATGAACTACTTGGATCGTTTCCTCTCTATATATGACATGCCTATGGGTAAAAGCTGGACTGTTCAGTTGCTGTCAGTAGCTTGTATGTCTCTAGCAGCAAAGATGGATGAGACAGAAGTTCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACTATACAAAGAATGGAGCTTCTTGTTCTAAGTAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCATTCATTGATTATTTCCTCAGTAAGAACTCTGTTGAGCAGAGTGTACAAAGCCAATCCTTGTTTAAATCATCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGGCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCGTTTCAGGAGAATTTCAAGCACCAGACATGAATAAAGCAATCCTTTCTTTTCCATATGTTGAGAAAGATAGAGTAATGAAGTGTATTGAACTGATCAGAGATTTTTCATTGCTTAATAATATATTATATGGAAATGGCAATGGTAATGGTGGTGGTTCAGTTCCTCAGAGCCCTGTTGGAGTGTTGGATGCTGCAACATGTTTGAGTTACAAAACAGAAGAATTAACTCCAGGTTCATGTGGTAATTCTTCTTCTTCTTTTCATGACAGTCCAGACAGCAAGAGAAGAAGACAAGACAGACCATCATCCAAAGATGATCCAACTCCATTCACAGACAGTGAAAAAAAAGGGTGA 1059 38.43 MADSFYCTENASTCFDGFDCLNEFDRRRTRDPNVESFGSGNLMSEERIIGMVEKEIDHLPRHDYLKRIRCGDLDLKFRKEAVDWIWKAHSHYSFGPLSFCLSMNYLDRFLSIYDMPMGKSWTVQLLSVACMSLAAKMDETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKNSVEQSVQSQSLFKSSQLILSTIKGIDFLEFKASEIALAVAISVSGEFQAPDMNKAILSFPYVEKDRVMKCIELIRDFSLLNNILYGNGNGNGGGSVPQSPVGVLDAATCLSYKTEELTPGSCGNSSSSFHDSPDSKRRRQDRPSSKDDPTPFTDSEKKG 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6040568 6043185 + Sed0007332.1 Sed10g0826 727330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0826 352 MobiDBLite consensus disorder prediction 309 323 - -
Sed10g0826 352 CDD CYCLIN_AtCycD-like_rpt1 78 175 - -
Sed10g0826 352 MobiDBLite consensus disorder prediction 324 352 - -
Sed10g0826 352 Pfam Cyclin, N-terminal domain 51 177 IPR006671 -
Sed10g0826 352 ProSitePatterns Cyclins signature. 78 109 IPR048258 -
Sed10g0826 352 FunFam D2/4-type cyclin 61 173 - -
Sed10g0826 352 FunFam D6-type cyclin 174 265 - -
Sed10g0826 352 SMART Cyclin_C_2 180 326 IPR004367 -
Sed10g0826 352 CDD CYCLIN_AtCycD-like_rpt2 180 267 - -
Sed10g0826 352 PANTHER CYCLINS 48 236 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed10g0826 352 Gene3D - 51 266 - -
Sed10g0826 352 Pfam Cyclin, C-terminal domain 180 271 IPR004367 -
Sed10g0826 352 SMART cyclin_7 83 171 IPR013763 -
Sed10g0826 352 Gene3D - 61 178 - -
Sed10g0826 352 MobiDBLite consensus disorder prediction 309 352 - -
Sed10g0826 352 SUPERFAMILY Cyclin-like 44 177 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1383 Sed-Chr3:8792868 Sed10g0826 Sed-Chr10:6040568 2.00E-76 dispersed
Sed05g3107 Sed-Chr5:41264057 Sed10g0826 Sed-Chr10:6040568 5.20E-33 dispersed
Sed05g3108 Sed-Chr5:41264057 Sed10g0826 Sed-Chr10:6040568 3.20E-24 dispersed
Sed07g1253 Sed-Chr7:9374859 Sed10g0826 Sed-Chr10:6040568 1.50E-49 dispersed
Sed10g0826 Sed-Chr10:6040568 Sed13g0425 Sed-Chr13:2798669 5.80E-47 dispersed
Sed10g0826 Sed-Chr10:6040568 Sed14g0996 Sed-Chr14:19366486 1.60E-142 wgd
Sed10g0826 Sed-Chr10:6040568 Sed04g0187 Sed-Chr4:1317654 2.70E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0826 K18810 - csv:101209378 513.457