Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0851 ATGAATCCTCCCACTTTCCCCATGCCATTTTCCGGCGACCCACTTCCGACCATTCTCTCCGGCACCGGCGACCTGCAAACTCCCCTTCAAAACCTCTCAGCCATCCATTCCAGAATAAACGCCGTCCAAACCTTTCTCTCCAACACCATCGAAGCAAAAACCCGCATCAACCATCAACAGTCAGCCGCCGTTTCATCCGAAATCGCCGCCGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTCGTAGCCTCCGCCCAAGCCATCGCGCCGAGCACTGCGGATTTGACGGCATCGACGAGTCAAACTCATCCGATTTCCGATGAGGCTACAAGAATCAAATCCGAGGAGTCTGACCGGGATTGCGAAATCGTGGAGCTAGATGCGATGGAATTGCTAGCGGAACACATCCATTTCTGCCAGATCTGCGGCAAAGGGTTCAAGCGCGATGCGAATCTGCGGATGCATATGCGAGCCCATGGGAACCGGTTCAAAACCCTAGAGGCGTTAGCGAAGCCGTTGGATGTTGATGTTACGGCGGATCACAGAGGCAATCGGTTGCGATTTTCGTGCCCTTACGGCGGTTGCGTGAGGAACAAATCGCACCAGAAATTTAGGGCGTTGAAATCGCTGATTTGCGTGAAGAATCACTTCAAGCGGAGCCACTGCCCTAAGATGTTTTCGTGCAATCGCTGCAACAAGAAGAGCTTCTCTGTAATGGCGGATTTGAAGAGCCATTTGAAGAACTGTGGAGAGTCCAAGTGGCGGTGTTCGTGTGGGACTTCGTTTTCGCGGAAGGATAAGTTGTTTGGGCACATGGCGCTGTTTGAAGGGCACATGCCGGCGGTGGTGGCGGCGGACGGCGGCGGGAAAGGGAAAGCCGAGGCGGCGACGGCGGTCATAGATGAAGATCGGATTTCCACGGATGCTGATTTGTTAAACGGTTTGAATGGTTCGGATGATGAATGTTTTGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCAGTGTTTGCAAGAGGTGTTGGGATTACCCTGTAATTTCGATTCGGAATCGTTTGTTGGTTTTTGA 1074 52.33 MNPPTFPMPFSGDPLPTILSGTGDLQTPLQNLSAIHSRINAVQTFLSNTIEAKTRINHQQSAAVSSEIAAAIQQIIVNGAALVASAQAIAPSTADLTASTSQTHPISDEATRIKSEESDRDCEIVELDAMELLAEHIHFCQICGKGFKRDANLRMHMRAHGNRFKTLEALAKPLDVDVTADHRGNRLRFSCPYGGCVRNKSHQKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKNCGESKWRCSCGTSFSRKDKLFGHMALFEGHMPAVVAADGGGKGKAEAATAVIDEDRISTDADLLNGLNGSDDECFESFLDGFGSIENQCLQEVLGLPCNFDSESFVGF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6368641 6369936 - Sed0025876.1 Sed10g0851 727355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0851 357 Gene3D Classic Zinc Finger 215 283 - -
Sed10g0851 357 SUPERFAMILY beta-beta-alpha zinc fingers 135 160 IPR036236 -
Sed10g0851 357 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Sed10g0851 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Sed10g0851 357 Pfam Zinc finger, C2H2 type 138 160 IPR013087 -
Sed10g0851 357 Gene3D Classic Zinc Finger 139 161 - -
Sed10g0851 357 SMART c2h2final6 227 248 IPR013087 -
Sed10g0851 357 SMART c2h2final6 255 279 IPR013087 -
Sed10g0851 357 SMART c2h2final6 138 160 IPR013087 -
Sed10g0851 357 SMART c2h2final6 189 222 IPR013087 -
Sed10g0851 357 FunFam Zinc finger protein 574 138 162 - -
Sed10g0851 357 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 227 251 - -
Sed10g0851 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 105 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0851 Sed-Chr10:6368641 Sed10g1769 Sed-Chr10:34767779 2.10E-60 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39757 PF00096 zf-C2H2 0.00021 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0851 - - - 0.0