Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0851 | ATGAATCCTCCCACTTTCCCCATGCCATTTTCCGGCGACCCACTTCCGACCATTCTCTCCGGCACCGGCGACCTGCAAACTCCCCTTCAAAACCTCTCAGCCATCCATTCCAGAATAAACGCCGTCCAAACCTTTCTCTCCAACACCATCGAAGCAAAAACCCGCATCAACCATCAACAGTCAGCCGCCGTTTCATCCGAAATCGCCGCCGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTCGTAGCCTCCGCCCAAGCCATCGCGCCGAGCACTGCGGATTTGACGGCATCGACGAGTCAAACTCATCCGATTTCCGATGAGGCTACAAGAATCAAATCCGAGGAGTCTGACCGGGATTGCGAAATCGTGGAGCTAGATGCGATGGAATTGCTAGCGGAACACATCCATTTCTGCCAGATCTGCGGCAAAGGGTTCAAGCGCGATGCGAATCTGCGGATGCATATGCGAGCCCATGGGAACCGGTTCAAAACCCTAGAGGCGTTAGCGAAGCCGTTGGATGTTGATGTTACGGCGGATCACAGAGGCAATCGGTTGCGATTTTCGTGCCCTTACGGCGGTTGCGTGAGGAACAAATCGCACCAGAAATTTAGGGCGTTGAAATCGCTGATTTGCGTGAAGAATCACTTCAAGCGGAGCCACTGCCCTAAGATGTTTTCGTGCAATCGCTGCAACAAGAAGAGCTTCTCTGTAATGGCGGATTTGAAGAGCCATTTGAAGAACTGTGGAGAGTCCAAGTGGCGGTGTTCGTGTGGGACTTCGTTTTCGCGGAAGGATAAGTTGTTTGGGCACATGGCGCTGTTTGAAGGGCACATGCCGGCGGTGGTGGCGGCGGACGGCGGCGGGAAAGGGAAAGCCGAGGCGGCGACGGCGGTCATAGATGAAGATCGGATTTCCACGGATGCTGATTTGTTAAACGGTTTGAATGGTTCGGATGATGAATGTTTTGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCAGTGTTTGCAAGAGGTGTTGGGATTACCCTGTAATTTCGATTCGGAATCGTTTGTTGGTTTTTGA | 1074 | 52.33 | MNPPTFPMPFSGDPLPTILSGTGDLQTPLQNLSAIHSRINAVQTFLSNTIEAKTRINHQQSAAVSSEIAAAIQQIIVNGAALVASAQAIAPSTADLTASTSQTHPISDEATRIKSEESDRDCEIVELDAMELLAEHIHFCQICGKGFKRDANLRMHMRAHGNRFKTLEALAKPLDVDVTADHRGNRLRFSCPYGGCVRNKSHQKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKNCGESKWRCSCGTSFSRKDKLFGHMALFEGHMPAVVAADGGGKGKAEAATAVIDEDRISTDADLLNGLNGSDDECFESFLDGFGSIENQCLQEVLGLPCNFDSESFVGF | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6368641 | 6369936 | - | Sed0025876.1 | Sed10g0851 | 727355 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0851 | 357 | Gene3D | Classic Zinc Finger | 215 | 283 | - | - | |
Sed10g0851 | 357 | SUPERFAMILY | beta-beta-alpha zinc fingers | 135 | 160 | IPR036236 | - | |
Sed10g0851 | 357 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 140 | 160 | IPR013087 | - | |
Sed10g0851 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 138 | 165 | IPR013087 | - | |
Sed10g0851 | 357 | Pfam | Zinc finger, C2H2 type | 138 | 160 | IPR013087 | - | |
Sed10g0851 | 357 | Gene3D | Classic Zinc Finger | 139 | 161 | - | - | |
Sed10g0851 | 357 | SMART | c2h2final6 | 227 | 248 | IPR013087 | - | |
Sed10g0851 | 357 | SMART | c2h2final6 | 255 | 279 | IPR013087 | - | |
Sed10g0851 | 357 | SMART | c2h2final6 | 138 | 160 | IPR013087 | - | |
Sed10g0851 | 357 | SMART | c2h2final6 | 189 | 222 | IPR013087 | - | |
Sed10g0851 | 357 | FunFam | Zinc finger protein 574 | 138 | 162 | - | - | |
Sed10g0851 | 357 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 227 | 251 | - | - | |
Sed10g0851 | 357 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 22 | 105 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0851 | Sed-Chr10:6368641 | Sed10g1769 | Sed-Chr10:34767779 | 2.10E-60 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39757 | PF00096 | zf-C2H2 | 0.00021 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0851 | - | - | - | 0.0 |