Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0883 | ATGGCGGCCGGTCAACCGTCAGATTCTTCCCCTCTCATTCCTCCGGCGCCGATCAACGACCCCAGTGAGATCGACCTTGAAGCCGGCCAGGGGGAACAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGACTTTATTGCTCCTTGCAAATGCAAAGGGACATCAAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCTTTTTCTCATTGTACTACCTGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTCCCAGATAGGCAATGGCGAACCCTGAAATTTCGATTTTTTGTGACCAGAGACATTATATCTATATTTTTTGCGGCTCAACTTGTGATTGCTTCTCTGGGATATTTGATGTATTTTATAGATGGCTGCCAACAGTACTGGCTTCGTCTTACTTGGGGTTTTGATAACAAATTTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGTTTCATCACTTGTTATGATCGGAGGGTTAGGAATGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGCTGCCACCCTGGACTATGTGCAGACTGTCATTTACCTGGAACTCTTTGTTTGTGGACTGACTGTACTACTTGTTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTGTTATTCATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCCACCATGGTTGGACAACGAATATGGCAGCGGCATTATCATATACTTGCAAAAAGAATGCTAACAAAGGAATATGTTGTAGAGGATGTAGATGGAGAGATGACAGGATCTGACTGGCTACCTCCACCACTTCCAGCAGAGCATGTTCAACAGCTCAAAACTCTTGGCCTTCTATGA | 975 | 43.79 | MAAGQPSDSSPLIPPAPINDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFSHCTTCKAPYHLRVHAVPDRQWRTLKFRFFVTRDIISIFFAAQLVIASLGYLMYFIDGCQQYWLRLTWGFDNKFSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCLWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6657289 | 6662328 | - | Sed0020439.1 | Sed10g0883 | 727387 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0883 | 324 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 28 | 90 | IPR011016 | GO:0008270(InterPro) | |
Sed10g0883 | 324 | SUPERFAMILY | RING/U-box | 32 | 88 | - | - | |
Sed10g0883 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 96 | IPR013083 | - | |
Sed10g0883 | 324 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 14 | 323 | - | - | |
Sed10g0883 | 324 | CDD | RING_CH-C4HC3_MARCH | 36 | 84 | - | - | |
Sed10g0883 | 324 | SMART | ringv_2 | 35 | 84 | IPR011016 | GO:0008270(InterPro) | |
Sed10g0883 | 324 | Pfam | RING-variant domain | 36 | 83 | IPR011016 | GO:0008270(InterPro) | |
Sed10g0883 | 324 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0883 | Sed-Chr10:6657289 | Sed12g2385 | Sed-Chr12:33719826 | 4.10E-55 | dispersed | |
Sed10g0883 | Sed-Chr10:6657289 | Sed10g0884 | Sed-Chr10:6657289 | 9.30E-177 | tandem | |
Sed10g0883 | Sed-Chr10:6657289 | Sed14g1078 | Sed-Chr14:20290848 | 9.60E-182 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0883 | - | - | - | 0.0 |