Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0883 ATGGCGGCCGGTCAACCGTCAGATTCTTCCCCTCTCATTCCTCCGGCGCCGATCAACGACCCCAGTGAGATCGACCTTGAAGCCGGCCAGGGGGAACAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGACTTTATTGCTCCTTGCAAATGCAAAGGGACATCAAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCTTTTTCTCATTGTACTACCTGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTCCCAGATAGGCAATGGCGAACCCTGAAATTTCGATTTTTTGTGACCAGAGACATTATATCTATATTTTTTGCGGCTCAACTTGTGATTGCTTCTCTGGGATATTTGATGTATTTTATAGATGGCTGCCAACAGTACTGGCTTCGTCTTACTTGGGGTTTTGATAACAAATTTAGTTTTTATTACATATGTGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGTTTCATCACTTGTTATGATCGGAGGGTTAGGAATGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGCTGCCACCCTGGACTATGTGCAGACTGTCATTTACCTGGAACTCTTTGTTTGTGGACTGACTGTACTACTTGTTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTGTTATTCATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCCACCATGGTTGGACAACGAATATGGCAGCGGCATTATCATATACTTGCAAAAAGAATGCTAACAAAGGAATATGTTGTAGAGGATGTAGATGGAGAGATGACAGGATCTGACTGGCTACCTCCACCACTTCCAGCAGAGCATGTTCAACAGCTCAAAACTCTTGGCCTTCTATGA 975 43.79 MAAGQPSDSSPLIPPAPINDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFSHCTTCKAPYHLRVHAVPDRQWRTLKFRFFVTRDIISIFFAAQLVIASLGYLMYFIDGCQQYWLRLTWGFDNKFSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGLCADCHLPGTLCLWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6657289 6662328 - Sed0020439.1 Sed10g0883 727387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0883 324 ProSiteProfiles Zinc finger RING-CH-type profile. 28 90 IPR011016 GO:0008270(InterPro)
Sed10g0883 324 SUPERFAMILY RING/U-box 32 88 - -
Sed10g0883 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 96 IPR013083 -
Sed10g0883 324 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 323 - -
Sed10g0883 324 CDD RING_CH-C4HC3_MARCH 36 84 - -
Sed10g0883 324 SMART ringv_2 35 84 IPR011016 GO:0008270(InterPro)
Sed10g0883 324 Pfam RING-variant domain 36 83 IPR011016 GO:0008270(InterPro)
Sed10g0883 324 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0883 Sed-Chr10:6657289 Sed12g2385 Sed-Chr12:33719826 4.10E-55 dispersed
Sed10g0883 Sed-Chr10:6657289 Sed10g0884 Sed-Chr10:6657289 9.30E-177 tandem
Sed10g0883 Sed-Chr10:6657289 Sed14g1078 Sed-Chr14:20290848 9.60E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0883 - - - 0.0