Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0904 ATGGCCGCTATCAATCTCCGACCCGACGATGACAATACGATACTCCTTTCACACCTCTACAACCCCGAGCTTCAAATCGTACTCCCCCAACAAGGGGGGGTGGAGGGAAATAAGGTGACTAAACGGCGGCGGCGGCGGAGCAAAGCGAAGGAGGCCAGGGAGGGGGCGGGATTGAAGAAGAGGAAGCTAAGTATAGAACAAGTGAAGCTTTTGGAGATGAATTTTGGAAACGAACACAAACTAGAATCGGAGAGGAAAGATCGGTTAGCCTCGGAATTGGGACTTGACCCACGGCAAGTGGCGGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGATGGAAGATGAATATTCCATGCTCAAAAAAGCTCATGATTCTGTTGTTCTTCAAAACTCTCACCTTGAATCTGAGATGATGAAACTCAAAGAGCAATTGATGCAAGCAAAGAATGAGATACAACAACTGGTCGAACGAAGCGAGAGAATTTCGAGTAATAGCCCATCCTCTTCGGTGACGATGGACGCGGTGCAATCGACGTCGTCTTTGGGAGAGCTACTTTTTGAAGAATATGAAGATGTGTTCTATTATATGCAAGAGAACAATTATGGTCAAGGAATGGAATGGGTTAATTTTTATATGTAG 651 46.39 MAAINLRPDDDNTILLSHLYNPELQIVLPQQGGVEGNKVTKRRRRRSKAKEAREGAGLKKRKLSIEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKMEDEYSMLKKAHDSVVLQNSHLESEMMKLKEQLMQAKNEIQQLVERSERISSNSPSSSVTMDAVQSTSSLGELLFEEYEDVFYYMQENNYGQGMEWVNFYM 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6986567 6988565 + Sed0024611.1 Sed10g0904 727408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0904 216 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677(InterPro)
Sed10g0904 216 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677(InterPro)
Sed10g0904 216 Coils Coil 106 126 - -
Sed10g0904 216 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed10g0904 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 174 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed10g0904 216 SMART HOX_1 57 118 IPR001356 GO:0003677(InterPro)
Sed10g0904 216 SUPERFAMILY Homeodomain-like 59 123 IPR009057 -
Sed10g0904 216 Pfam Homeodomain 61 113 IPR001356 GO:0003677(InterPro)
Sed10g0904 216 Gene3D - 53 122 - -
Sed10g0904 216 FunFam homeobox-leucine zipper protein ATHB-40 53 122 - -
Sed10g0904 216 Coils Coil 134 168 - -
Sed10g0904 216 MobiDBLite consensus disorder prediction 35 58 - -
Sed10g0904 216 CDD homeodomain 59 115 IPR001356 GO:0003677(InterPro)
Sed10g0904 216 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1686 Sed-Chr7:15100056 Sed10g0904 Sed-Chr10:6986567 6.20E-41 dispersed
Sed10g0904 Sed-Chr10:6986567 Sed13g1002 Sed-Chr13:7917387 5.30E-35 dispersed
Sed10g0904 Sed-Chr10:6986567 Sed13g1053 Sed-Chr13:8970251 5.90E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39759 PF00046 Homeodomain 2.50E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0904 K09338 - csv:101216890 308.916