Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0904 | ATGGCCGCTATCAATCTCCGACCCGACGATGACAATACGATACTCCTTTCACACCTCTACAACCCCGAGCTTCAAATCGTACTCCCCCAACAAGGGGGGGTGGAGGGAAATAAGGTGACTAAACGGCGGCGGCGGCGGAGCAAAGCGAAGGAGGCCAGGGAGGGGGCGGGATTGAAGAAGAGGAAGCTAAGTATAGAACAAGTGAAGCTTTTGGAGATGAATTTTGGAAACGAACACAAACTAGAATCGGAGAGGAAAGATCGGTTAGCCTCGGAATTGGGACTTGACCCACGGCAAGTGGCGGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGATGGAAGATGAATATTCCATGCTCAAAAAAGCTCATGATTCTGTTGTTCTTCAAAACTCTCACCTTGAATCTGAGATGATGAAACTCAAAGAGCAATTGATGCAAGCAAAGAATGAGATACAACAACTGGTCGAACGAAGCGAGAGAATTTCGAGTAATAGCCCATCCTCTTCGGTGACGATGGACGCGGTGCAATCGACGTCGTCTTTGGGAGAGCTACTTTTTGAAGAATATGAAGATGTGTTCTATTATATGCAAGAGAACAATTATGGTCAAGGAATGGAATGGGTTAATTTTTATATGTAG | 651 | 46.39 | MAAINLRPDDDNTILLSHLYNPELQIVLPQQGGVEGNKVTKRRRRRSKAKEAREGAGLKKRKLSIEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKMEDEYSMLKKAHDSVVLQNSHLESEMMKLKEQLMQAKNEIQQLVERSERISSNSPSSSVTMDAVQSTSSLGELLFEEYEDVFYYMQENNYGQGMEWVNFYM | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6986567 | 6988565 | + | Sed0024611.1 | Sed10g0904 | 727408 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0904 | 216 | PRINTS | Lambda-repressor HTH signature | 85 | 94 | IPR000047 | GO:0003677(InterPro) | |
Sed10g0904 | 216 | PRINTS | Lambda-repressor HTH signature | 94 | 110 | IPR000047 | GO:0003677(InterPro) | |
Sed10g0904 | 216 | Coils | Coil | 106 | 126 | - | - | |
Sed10g0904 | 216 | ProSitePatterns | 'Homeobox' domain signature. | 89 | 112 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed10g0904 | 216 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 41 | 174 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Sed10g0904 | 216 | SMART | HOX_1 | 57 | 118 | IPR001356 | GO:0003677(InterPro) | |
Sed10g0904 | 216 | SUPERFAMILY | Homeodomain-like | 59 | 123 | IPR009057 | - | |
Sed10g0904 | 216 | Pfam | Homeodomain | 61 | 113 | IPR001356 | GO:0003677(InterPro) | |
Sed10g0904 | 216 | Gene3D | - | 53 | 122 | - | - | |
Sed10g0904 | 216 | FunFam | homeobox-leucine zipper protein ATHB-40 | 53 | 122 | - | - | |
Sed10g0904 | 216 | Coils | Coil | 134 | 168 | - | - | |
Sed10g0904 | 216 | MobiDBLite | consensus disorder prediction | 35 | 58 | - | - | |
Sed10g0904 | 216 | CDD | homeodomain | 59 | 115 | IPR001356 | GO:0003677(InterPro) | |
Sed10g0904 | 216 | ProSiteProfiles | 'Homeobox' domain profile. | 54 | 114 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1686 | Sed-Chr7:15100056 | Sed10g0904 | Sed-Chr10:6986567 | 6.20E-41 | dispersed | |
Sed10g0904 | Sed-Chr10:6986567 | Sed13g1002 | Sed-Chr13:7917387 | 5.30E-35 | dispersed | |
Sed10g0904 | Sed-Chr10:6986567 | Sed13g1053 | Sed-Chr13:8970251 | 5.90E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39759 | PF00046 | Homeodomain | 2.50E-16 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0904 | K09338 | - | csv:101216890 | 308.916 |