Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g0908 | ATGCCGGCCGATTTGGACAATTCCTCGCCGGCTTCCGGCGAACCCGCCGTCTCCTCCCCCAAACCCGCCGTCAAGAAAAAGCGAAGCCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTTCTCTGTCCCCGAAATCCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGTTTTCAGAGAGATCAGAATCTTCAGCTTCACCGGCGAGGCCACAATCTGCCGTGGAAGCTCCGGCAGAGGTCCGGCAACGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCACGATCCCTCTCGAGCTCTCGGCGATTTGACCGGAATTAAGAAGCACTTTTGCAGAAAACACGGCGAGAAGAACTGGAAATGCGATAAGTGTTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGCGGTACTCGTGAGTATAAATGCGATTGTGGAACCCTTTTTTCCAGGAGGGATAGTTTTATTACGCATAGAGCTTTTTGTGATGCATTGGCTGTGGAAAAGGCGAAAGCTCAGCCTCAATCATCGGTGGAGAAACCAATTTCTAATTCTCAGACGGCGGTGGAGTCAAATCCGGTGCTGTCTCCGCCGTCATCTCCGGCGGTATCATCTCCTCCTCCGCCGCAGCCAACTTGTGTTTTGTCAACTGTTTTGCCGATTCAGAGTCAAGATGGGCCGGAGAATTCTCCGCTGTATATCGAAGAAGCACCAGCTTCGACGGGCATGAGTGGTAGTTGCAGCAGCAGCAAGAGTCCCAGCAGCAATAGCAGTTCGGGTAGCCGATTTGCTAGCTTGTTTGCATCGACGACTACTTCAATTAGACCGCAACCTCCTCGTCCCCCAGTGTTTACTGATTTGATACATTCTATGGCTTGTTCGGATCGCTCGTCCGACTATTCTCCAACGACAACTATGGAACCTATTTCTCTATGTCTTTCCACTAGCCATGGGGCATCAATTTTCGGGGCTGCCAGTCAGGACCTTCGGCAGTACACACCAACTCCACAACCTGCAATGTCTGCTACTGCGCTGCTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAACGCCTCGTTGCTTCGTGGCTTAGGCTTAGTACCGTCCTCCTCTTCGGCTATGCCGCAGGAGAGCTTGCCATGGAATCCAAGGCTAGTCGAACCCGATGGCATCTCGATCGCTGCAGGGCTTGGACTCGGACTCCCTTGTGATGGAAACTCCGGATTGAAGGAACTAATGAGGAGCAACCATTCCATATTTGCCCCAAAACATACCACCCTCGACTTCCTCGGACTGGGAATGGCAGCTGGTGGCAGCCCCAGCAGTGGCCTAGCTGCACTAATCACGTCAATAGGCGGGAACGTGGACGTTACGACAACAACCGGATCATATGGAGCCGATGACCTATCCAGCAACGACATGAACATAAACAATTAG | 1488 | 51.81 | MPADLDNSSPASGEPAVSSPKPAVKKKRSLPGMPDPDAEVISLSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGNEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKNWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAVEKAKAQPQSSVEKPISNSQTAVESNPVLSPPSSPAVSSPPPPQPTCVLSTVLPIQSQDGPENSPLYIEEAPASTGMSGSCSSSKSPSSNSSSGSRFASLFASTTTSIRPQPPRPPVFTDLIHSMACSDRSSDYSPTTTMEPISLCLSTSHGASIFGAASQDLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVPSSSSAMPQESLPWNPRLVEPDGISIAAGLGLGLPCDGNSGLKELMRSNHSIFAPKHTTLDFLGLGMAAGGSPSSGLAALITSIGGNVDVTTTTGSYGADDLSSNDMNINN | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7033708 | 7036352 | - | Sed0022665.1 | Sed10g0908 | 727412 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g0908 | 495 | Gene3D | Classic Zinc Finger | 35 | 100 | - | - | |
Sed10g0908 | 495 | Gene3D | Classic Zinc Finger | 108 | 188 | - | - | |
Sed10g0908 | 495 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 56 | 76 | IPR013087 | - | |
Sed10g0908 | 495 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 16 | 452 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed10g0908 | 495 | MobiDBLite | consensus disorder prediction | 257 | 278 | - | - | |
Sed10g0908 | 495 | MobiDBLite | consensus disorder prediction | 215 | 230 | - | - | |
Sed10g0908 | 495 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 129 | 153 | - | - | |
Sed10g0908 | 495 | SMART | c2h2final6 | 130 | 150 | IPR013087 | - | |
Sed10g0908 | 495 | SMART | c2h2final6 | 54 | 76 | IPR013087 | - | |
Sed10g0908 | 495 | SMART | c2h2final6 | 95 | 125 | IPR013087 | - | |
Sed10g0908 | 495 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 108 | 187 | - | - | |
Sed10g0908 | 495 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 150 | IPR036236 | - | |
Sed10g0908 | 495 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Sed10g0908 | 495 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 54 | 76 | IPR013087 | - | |
Sed10g0908 | 495 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 156 | 193 | - | - | |
Sed10g0908 | 495 | FunFam | protein indeterminate-domain 12-like | 33 | 101 | - | - | |
Sed10g0908 | 495 | MobiDBLite | consensus disorder prediction | 189 | 278 | - | - | |
Sed10g0908 | 495 | MobiDBLite | consensus disorder prediction | 192 | 214 | - | - | |
Sed10g0908 | 495 | MobiDBLite | consensus disorder prediction | 231 | 245 | - | - | |
Sed10g0908 | 495 | Pfam | Zinc finger, C2H2 type | 54 | 76 | IPR013087 | - | |
Sed10g0908 | 495 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 91 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g1680 | Sed-Chr9:40159673 | Sed10g0908 | Sed-Chr10:7033708 | 7.20E-85 | dispersed | |
Sed10g0908 | Sed-Chr10:7033708 | Sed13g0998 | Sed-Chr13:7833345 | 1.70E-113 | dispersed | |
Sed10g0908 | Sed-Chr10:7033708 | Sed14g1101 | Sed-Chr14:20503976 | 1.20E-186 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39761 | PF00096 | zf-C2H2 | 0.005 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g0908 | K25869 | - | csv:101217597 | 740.725 |