Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0908 ATGCCGGCCGATTTGGACAATTCCTCGCCGGCTTCCGGCGAACCCGCCGTCTCCTCCCCCAAACCCGCCGTCAAGAAAAAGCGAAGCCTCCCCGGAATGCCAGATCCGGATGCGGAAGTGATTTCTCTGTCCCCGAAATCCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGTTTTCAGAGAGATCAGAATCTTCAGCTTCACCGGCGAGGCCACAATCTGCCGTGGAAGCTCCGGCAGAGGTCCGGCAACGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCACGATCCCTCTCGAGCTCTCGGCGATTTGACCGGAATTAAGAAGCACTTTTGCAGAAAACACGGCGAGAAGAACTGGAAATGCGATAAGTGTTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGCGGTACTCGTGAGTATAAATGCGATTGTGGAACCCTTTTTTCCAGGAGGGATAGTTTTATTACGCATAGAGCTTTTTGTGATGCATTGGCTGTGGAAAAGGCGAAAGCTCAGCCTCAATCATCGGTGGAGAAACCAATTTCTAATTCTCAGACGGCGGTGGAGTCAAATCCGGTGCTGTCTCCGCCGTCATCTCCGGCGGTATCATCTCCTCCTCCGCCGCAGCCAACTTGTGTTTTGTCAACTGTTTTGCCGATTCAGAGTCAAGATGGGCCGGAGAATTCTCCGCTGTATATCGAAGAAGCACCAGCTTCGACGGGCATGAGTGGTAGTTGCAGCAGCAGCAAGAGTCCCAGCAGCAATAGCAGTTCGGGTAGCCGATTTGCTAGCTTGTTTGCATCGACGACTACTTCAATTAGACCGCAACCTCCTCGTCCCCCAGTGTTTACTGATTTGATACATTCTATGGCTTGTTCGGATCGCTCGTCCGACTATTCTCCAACGACAACTATGGAACCTATTTCTCTATGTCTTTCCACTAGCCATGGGGCATCAATTTTCGGGGCTGCCAGTCAGGACCTTCGGCAGTACACACCAACTCCACAACCTGCAATGTCTGCTACTGCGCTGCTACAAAAGGCTGCTCAAATGGGAGCAGCAGCATCAAACGCCTCGTTGCTTCGTGGCTTAGGCTTAGTACCGTCCTCCTCTTCGGCTATGCCGCAGGAGAGCTTGCCATGGAATCCAAGGCTAGTCGAACCCGATGGCATCTCGATCGCTGCAGGGCTTGGACTCGGACTCCCTTGTGATGGAAACTCCGGATTGAAGGAACTAATGAGGAGCAACCATTCCATATTTGCCCCAAAACATACCACCCTCGACTTCCTCGGACTGGGAATGGCAGCTGGTGGCAGCCCCAGCAGTGGCCTAGCTGCACTAATCACGTCAATAGGCGGGAACGTGGACGTTACGACAACAACCGGATCATATGGAGCCGATGACCTATCCAGCAACGACATGAACATAAACAATTAG 1488 51.81 MPADLDNSSPASGEPAVSSPKPAVKKKRSLPGMPDPDAEVISLSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGNEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKNWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAVEKAKAQPQSSVEKPISNSQTAVESNPVLSPPSSPAVSSPPPPQPTCVLSTVLPIQSQDGPENSPLYIEEAPASTGMSGSCSSSKSPSSNSSSGSRFASLFASTTTSIRPQPPRPPVFTDLIHSMACSDRSSDYSPTTTMEPISLCLSTSHGASIFGAASQDLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVPSSSSAMPQESLPWNPRLVEPDGISIAAGLGLGLPCDGNSGLKELMRSNHSIFAPKHTTLDFLGLGMAAGGSPSSGLAALITSIGGNVDVTTTTGSYGADDLSSNDMNINN 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7033708 7036352 - Sed0022665.1 Sed10g0908 727412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0908 495 Gene3D Classic Zinc Finger 35 100 - -
Sed10g0908 495 Gene3D Classic Zinc Finger 108 188 - -
Sed10g0908 495 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Sed10g0908 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 452 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed10g0908 495 MobiDBLite consensus disorder prediction 257 278 - -
Sed10g0908 495 MobiDBLite consensus disorder prediction 215 230 - -
Sed10g0908 495 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 129 153 - -
Sed10g0908 495 SMART c2h2final6 130 150 IPR013087 -
Sed10g0908 495 SMART c2h2final6 54 76 IPR013087 -
Sed10g0908 495 SMART c2h2final6 95 125 IPR013087 -
Sed10g0908 495 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Sed10g0908 495 SUPERFAMILY beta-beta-alpha zinc fingers 53 150 IPR036236 -
Sed10g0908 495 MobiDBLite consensus disorder prediction 1 37 - -
Sed10g0908 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Sed10g0908 495 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 156 193 - -
Sed10g0908 495 FunFam protein indeterminate-domain 12-like 33 101 - -
Sed10g0908 495 MobiDBLite consensus disorder prediction 189 278 - -
Sed10g0908 495 MobiDBLite consensus disorder prediction 192 214 - -
Sed10g0908 495 MobiDBLite consensus disorder prediction 231 245 - -
Sed10g0908 495 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
Sed10g0908 495 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 91 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1680 Sed-Chr9:40159673 Sed10g0908 Sed-Chr10:7033708 7.20E-85 dispersed
Sed10g0908 Sed-Chr10:7033708 Sed13g0998 Sed-Chr13:7833345 1.70E-113 dispersed
Sed10g0908 Sed-Chr10:7033708 Sed14g1101 Sed-Chr14:20503976 1.20E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39761 PF00096 zf-C2H2 0.005 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0908 K25869 - csv:101217597 740.725