Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0918 ATGAACGATTTATTGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAGCAGGCGCTAAGAGACGCCGCCGCCGTCGATTTGGAATCTGGCGGCCAAGAATTGAACCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGGAAAGGTGGAGGAAATCAAGACCCAAATGGAAGAGACGACGAATCTCTTAGCCGAGATTCAAGAACTAAATCAAGAAGCGAAATCAACCCACAACGCGAAAATCCTCCGCGGATTACGAGACAGAATCGACTCCGACATGATCTCGATCCTCCGCCGAGCGAAACTGCTAAAAGAGAAATTGGCGAATCTTGACCAATCCAACGCCGGAAACCGCCTGGTCTCCGTCGCGTTCGGCGAGGGAACCGCCGTGGACAGAACGAGAATCGCAATCACGAACGGATTGAGAGCGAAACTGAGGGAATTGATGAACGAGTTCCAGTCGCTGAGAAACAGAGTAATCGCGGATCATAAAGAGGATTTGCGGAGAAGGTATTTTGGAGCGACTGGGGAAGAACCCAGTGAAGAAAAAGTGGAGAAGATGATGAATGGGAGCTTGAAAGTGGGCATGAGCGAGGCCGAGTCGGGGGACCGAGCCCGGGACGAGTCGGTGTTGGATCTACAGAGGAGTTTGGACAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAATCAAGCGGAGAAGATGGATGATATTGAGGAGAATGTAGCCAAAGGTGGAAGGTTCATCAATGGTGGAACTAGGAGTCTTTATTATGCAAACCAGATGAAGAGGAAGAATGGGAAATGGGTTTATTGGGTTTGGGGTGTCATTTTTGTAATTTTGCTTGTTTGTGCTGTTGCTACTTTGGTTTGTTGA 888 47.86 MNDLLTKSFLSYVELKKQALRDAAAVDLESGGQELNPTEEQNLSLFFGKVEEIKTQMEETTNLLAEIQELNQEAKSTHNAKILRGLRDRIDSDMISILRRAKLLKEKLANLDQSNAGNRLVSVAFGEGTAVDRTRIAITNGLRAKLRELMNEFQSLRNRVIADHKEDLRRRYFGATGEEPSEEKVEKMMNGSLKVGMSEAESGDRARDESVLDLQRSLDKLHQVFLDMAILVENQAEKMDDIEENVAKGGRFINGGTRSLYYANQMKRKNGKWVYWVWGVIFVILLVCAVATLVC 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7200496 7201383 - Sed0008880.1 Sed10g0918 727422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0918 295 PANTHER SYNTAXIN 49 283 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed10g0918 295 Gene3D - 197 294 - -
Sed10g0918 295 Pfam Syntaxin 46 236 IPR006011 GO:0016020(InterPro)
Sed10g0918 295 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 40 171 - -
Sed10g0918 295 Coils Coil 139 159 - -
Sed10g0918 295 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Sed10g0918 295 SUPERFAMILY t-snare proteins 42 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed10g0918 295 CDD SNARE_syntaxin1-like 205 260 - -
Sed10g0918 295 CDD SynN 46 193 IPR006011 GO:0016020(InterPro)
Sed10g0918 295 SMART tSNARE_6 196 263 IPR000727 -
Sed10g0918 295 Coils Coil 50 77 - -
Sed10g0918 295 Gene3D - 38 171 - -
Sed10g0918 295 SMART SynN_4 38 165 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0918 Sed-Chr10:7200496 Sed14g0695 Sed-Chr14:6907447 1.60E-53 dispersed
Sed10g0918 Sed-Chr10:7200496 Sed14g1127 Sed-Chr14:20742460 1.40E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0918 K08486 - csv:101217836 461.455