Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0961 | ATGAATGGAAATCTTCAAAAAAGAGTTCATACAATTATTGGAGCATTTCTCAGGTCCCCAACCCTCAAAGCCACCATCACTAGAGATATCCAAAACACTGTTAAACTAAGCCTTGCCAGTTGGGACACCTCCCAATTGGTCTATGTCCAAACTCAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTTTTGATGAGTGTGGGACCCGGTGAAGATTTGAAGATTTTGAAAAGGGAATTTGAAGAGTTTATCAAAGGCTTGATTTGTTTACCCCTTAAATTGCCTGGAACCAGACTATATAAATCTTTAAAGGCGAGAGAGAAGCTGTTGAAAATAGTGAGTAAAATTGTGGAAAAGAGGAAATGGACGGCGGAGGAGAGGGATGCACCGAGAGATGCGGTGGACGTGCTCTTACAGGATCACGATGGAAGCCAAGGGCTGCCGTTGGATTTCATCAGCAGCCACATCATAGAGCTGATGATCCCCGGCGAGGAGACGGTGCCGATGGCGATGACTCTCGCCGTCAAATTTCTCACTGACTGCCCCCTCGCTCTTTCCCAAATGAAGGAGGAGAATATGAAACTGAAGAAGCAGAAGGATGATTCTGGCCTGGAGTATACATGGACAGATTACATGTCTCTGCCTTTTACTCAAAATGTGATTAGTGAAACGTTAAGAATCGCCAATATCATCAATGGGGTTTGGCGGAAAGCTCAAAAAGATGTCAAAATCAAAGGATATTTAATACCACAAGGATGGTGCGTTTTGGCATCTTTTATTTCGGTTCATATGGATGAAAGTAACTATGAAAACCCTCATCAGTTTAATCCATGGAGATGGGAGGAAATTGGTTCTGCAACTAACAATCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCCGGCATCGAGCTCGCCAGGCTCGAAGTCTCGATTTTCCTTCATCATCTTGTCACAACCTACAAATGGGGAGCTGAGAAGGATGAAATCATACATTTTCCGACAGTGAAGATGAGGAGGAAGCTGCCAATCACAATCACAACATTAAGCTCTTGA | 1065 | 43.47 | MNGNLQKRVHTIIGAFLRSPTLKATITRDIQNTVKLSLASWDTSQLVYVQTQTKQITFEVLVKVLMSVGPGEDLKILKREFEEFIKGLICLPLKLPGTRLYKSLKAREKLLKIVSKIVEKRKWTAEERDAPRDAVDVLLQDHDGSQGLPLDFISSHIIELMIPGEETVPMAMTLAVKFLTDCPLALSQMKEENMKLKKQKDDSGLEYTWTDYMSLPFTQNVISETLRIANIINGVWRKAQKDVKIKGYLIPQGWCVLASFISVHMDESNYENPHQFNPWRWEEIGSATNNHNFTPFGGGQRLCPGIELARLEVSIFLHHLVTTYKWGAEKDEIIHFPTVKMRRKLPITITTLSS | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 7849844 | 7859071 | + | Sed0024494.1 | Sed10g0961 | 727465 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0961 | 354 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 296 | 305 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g0961 | 354 | PRINTS | E-class P450 group I signature | 259 | 283 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | E-class P450 group I signature | 293 | 303 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | E-class P450 group I signature | 303 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | E-class P450 group I signature | 152 | 169 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PANTHER | CYTOCHROME P450 26 | 4 | 328 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Sed10g0961 | 354 | Pfam | Cytochrome P450 | 94 | 331 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | Coils | Coil | 186 | 206 | - | - | |
| Sed10g0961 | 354 | SUPERFAMILY | Cytochrome P450 | 1 | 349 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | CDD | CYP90-like | 1 | 350 | - | - | |
| Sed10g0961 | 354 | Gene3D | Cytochrome P450 | 1 | 353 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | P450 superfamily signature | 163 | 180 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | P450 superfamily signature | 303 | 314 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | P450 superfamily signature | 220 | 231 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0961 | 354 | PRINTS | P450 superfamily signature | 294 | 303 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g0961 | Sed-Chr10:7849844 | Sed10g2110 | Sed-Chr10:37578772 | 1.40E-45 | dispersed | |
| Sed10g0961 | Sed-Chr10:7849844 | Sed14g1163 | Sed-Chr14:20979121 | 2.40E-178 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0961 | K12637 | - | csv:101203911 | 601.282 |