Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0971 ATGTCTAGCTTTTTCACTTTAGGAGGGAGTGGAGGAGGAAGGGGAAATCAAGATCAAGAACCCCAACCACCCCACCACACAAACAGACCGAATGAAATTACTCACCCGGAAAGCTTGTATTGGTACAAGCCCGGCAACATCGAGCTATGGCAACAACAGCAGCAGCAGCAGCAGCAACAACAACACGAAGAACAAGTGTTGTTTCATCACAACATGAACCACCCCCACCCGGTAGGGGGACAGCGGCGAGGCTCGGATGAGTCCTCGTCGAGATCGGGTAATTTCATGATTGGATCAGGAGGGGGAAGTGGAATCAGCTGCCAAGATTGTGGGAACCAAGCCAAGAAAGACTGCAGCCATATGCGGTGCAGGACTTGCTGCAAGACCCGGGGGTTCCCTTGCCAAACACACGTCAAAAGCACTTGGGTCCCTGCAGCCAAACGCCGCGAACGCCAAGAGAAGCTCTCCGCCTTACAATCACATAACCAACAACAACCACTTACCACTTTTCCCAAACGCCACAGAGATTATAACAACAACATTTCTGGGTTAGAAATTGGGAATTTCCCACCGGAGCTAAACTCACCGGCGGTGTTCCGTTGCGTACGTGTCAGCTCCACCGACGAATCCGACGAACAATACGCGTATCAAACGGCGGTCAACATCGGCGGACACGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATCGCCGCCGGCGAGACCTCCTCCGGCGGCGGCGGGAGTAGTAGTGGAATGCAGCCGCTCAATTTCATCGCCGGCGCCGGCGATGCCACCACCGGCAGCGGCGGTTCCTCCGCCGCATTACCGTTGCTCGATCCATCCTCCTTGTATTCAACGCCGCTCAGTAGCGGCTACATGGCGGGTACGCAATTCTTCATACCACCAAGATCTTAA 930 53.33 MSSFFTLGGSGGGRGNQDQEPQPPHHTNRPNEITHPESLYWYKPGNIELWQQQQQQQQQQQHEEQVLFHHNMNHPHPVGGQRRGSDESSSRSGNFMIGSGGGSGISCQDCGNQAKKDCSHMRCRTCCKTRGFPCQTHVKSTWVPAAKRRERQEKLSALQSHNQQQPLTTFPKRHRDYNNNISGLEIGNFPPELNSPAVFRCVRVSSTDESDEQYAYQTAVNIGGHVFKGILYDQGPENNYIAAGETSSGGGGSSSGMQPLNFIAGAGDATTGSGGSSAALPLLDPSSLYSTPLSSGYMAGTQFFIPPRS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7959052 7960668 - Sed0014670.1 Sed10g0971 727475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0971 309 MobiDBLite consensus disorder prediction 1 37 - -
Sed10g0971 309 MobiDBLite consensus disorder prediction 151 173 - -
Sed10g0971 309 MobiDBLite consensus disorder prediction 71 97 - -
Sed10g0971 309 MobiDBLite consensus disorder prediction 83 97 - -
Sed10g0971 309 MobiDBLite consensus disorder prediction 1 29 - -
Sed10g0971 309 NCBIfam putative zinc finger domain, LRP1 type 106 148 IPR006510 -
Sed10g0971 309 NCBIfam LRP1 C-terminal domain 189 236 IPR006511 -
Sed10g0971 309 MobiDBLite consensus disorder prediction 157 173 - -
Sed10g0971 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 303 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Sed10g0971 309 Pfam Domain of unknown function (DUF702) 104 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1677 Sed-Chr7:14583241 Sed10g0971 Sed-Chr10:7959052 1.20E-54 dispersed
Sed01g2520 Sed-Chr1:18852440 Sed10g0971 Sed-Chr10:7959052 7.50E-48 wgd
Sed10g0971 Sed-Chr10:7959052 Sed11g1067 Sed-Chr11:26122032 6.00E-56 wgd
Sed10g0971 Sed-Chr10:7959052 Sed14g1169 Sed-Chr14:21046792 5.50E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39766 PF05142 DUF702 8.80E-62 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0971 K27807 - csv:101207689 361.688