Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g0976 | ATGGCAACAATCACACAGTTACAAATATCACTATACTTGATAAGCCACATGGATGCTCTCCTTCAACCTGTGCACATGGCGCTCTTTCTCGCCGGTCTGTTTCTGGTGGTCCTGGTTTTCGGGTTCCGGCGAAAGCTCCCGTACCCGCCCGGCCCGAAAGGCTTGCCCTTCATCGGCAACATGCTCATGATGGATCAGCTCACTCACCGTGGCCTGGCCAATCTCGCCAAGCGCTACGGCGGAATCTTCCATATGCGCATGGGCTTCCTTCACATGGTTACCGTCTCCGACCCTCATCTCGCTCGCCAAGTTCTTCAGGTCCATGACAATATTTGTTCGAATCGTCCGGCCACCATCGCTATAAGCTACTTGACATACGACCGTGCCGACATGGCTTTTGCTAACTATGGCCCTTTCTGGCGACAAATGCGAAAGATTTGTGTCATGAAGTTGTTTAGCCGCAAACGAGCTGAGTCATGGGCGTCGGTTCGAGATGAGGTAGACACCACCATTAGAAACATTGCCTATGAGACGGGAACTGCCGTAAACGTCGGCGAGCGAGTCTTTGAATTGACGATGAGTATCATTTACAAAGCCGCATTTGGAACGAGTGCGGTGCAAGGTCGGGATGAGTTCATACGAATCTTGCAAGAATTTTCCAAACTTTTTGGAGCCTTCAATATCGCGGATTTTATTCCAAGTCTCGGCTGGATTGACCCTCAAGGCTTGAACACTAGGCTAGTTAAAGCCCGTAAATCACTCGATAAGTTCATCGACGCCATCATAGATGAACATATGGACAAGAAAAGAAATAGAGAATTGTTATCCAATGTTAAAAAGGATGAAATTGATAGCGATATGGTGGATGAATTACTAGCTTTTTACAATGAAGAAGCTGCTAATGAATCGTATGATCTACAAAATGGCATCCAACTCAACCGTGACAACATCAAAGCAATTATCATGGACGTCATGTTCGGAGGAACAGAAACGGTTGCATCGGCGATAGAATGGGTAATGTCGGAGCTGATAAAAAGCCCACAGGATTTGAAAAACGCCCAACAAGAATTAGCTCAAGTCGTCGGTTTCGAACGACGTGTCGAAGAAACCGATTTCGACAACTTAACCTTCTTGAAATGCTGCGTCAAGGAAACGCTCCGCCTCCACCCGCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCGGTGGTTTCCGGCTACTTCATCCCGGCCAAATCCCGGGTCATGGTCAACGCGTGGGCCATCGGGCGGGACCCGGGCTCCTGGGCCGACCCCGACACCTTCCGCCCCGCCCGGTTCCTGAAACAAGGGGTGCCCGATTTCAAAGGGAGCAATTTCGAGTTCATCCCGTTCGGGTCGGGTCGGCGCTCCTGCCCCGGTATGCAATTGGGCCTCTATGGGCTTGAAATGGCGGTGGCCCACTTGCTGCACTGTTTCACGTGGGAGCTGCCCGACGGGTTGAAGCCTAGCGAAATGGATATGGGTGACGTTTTCGGGCTGACCGCTCCGAAAGCGACCCGACTCGTTGCTGTGCCCACTAAGCGGGTTCTGTGCCCACTCGTTTAA | 1590 | 51.57 | MATITQLQISLYLISHMDALLQPVHMALFLAGLFLVVLVFGFRRKLPYPPGPKGLPFIGNMLMMDQLTHRGLANLAKRYGGIFHMRMGFLHMVTVSDPHLARQVLQVHDNICSNRPATIAISYLTYDRADMAFANYGPFWRQMRKICVMKLFSRKRAESWASVRDEVDTTIRNIAYETGTAVNVGERVFELTMSIIYKAAFGTSAVQGRDEFIRILQEFSKLFGAFNIADFIPSLGWIDPQGLNTRLVKARKSLDKFIDAIIDEHMDKKRNRELLSNVKKDEIDSDMVDELLAFYNEEAANESYDLQNGIQLNRDNIKAIIMDVMFGGTETVASAIEWVMSELIKSPQDLKNAQQELAQVVGFERRVEETDFDNLTFLKCCVKETLRLHPPIPLLLHETAEDAVVSGYFIPAKSRVMVNAWAIGRDPGSWADPDTFRPARFLKQGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYGLEMAVAHLLHCFTWELPDGLKPSEMDMGDVFGLTAPKATRLVAVPTKRVLCPLV | 529 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 8112930 | 8117056 | + | Sed0000905.1 | Sed10g0976 | 727480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g0976 | 529 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | P450 superfamily signature | 457 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | Gene3D | Cytochrome P450 | 42 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 459 | 468 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 100 | 121 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 466 | 489 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 379 | 397 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 76 | 95 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PRINTS | E-class P450 group I signature | 456 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | Pfam | Cytochrome P450 | 49 | 512 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | FunFam | Cytochrome P450 84A1 | 41 | 522 | - | - | |
| Sed10g0976 | 529 | SUPERFAMILY | Cytochrome P450 | 42 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed10g0976 | 529 | PANTHER | CYTOCHROME P450 84A1-RELATED | 27 | 528 | IPR053062 | GO:0004497(PANTHER) | |
| Sed10g0976 | 529 | CDD | CYP71-like | 78 | 516 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g2291 | Sed-Chr5:35460101 | Sed10g0976 | Sed-Chr10:8112930 | 6.50E-188 | dispersed | |
| Sed10g0976 | Sed-Chr10:8112930 | Sed14g0165 | Sed-Chr14:1907843 | 9.40E-110 | dispersed | |
| Sed10g0976 | Sed-Chr10:8112930 | Sed10g0891 | Sed-Chr10:6721021 | 4.10E-105 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g0976 | K09755 | - | csv:101205783 | 814.683 |