Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g0979 ATGAGGATAATTTGTGATTCCTGTGAAAGTGCTGCAGCCACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTGTAGCATGTGATGCCAAGGTGCATATGTGCAATAAGCTTGCGAGTCGCCATGTAAGGGTTGGACTTGCAGATCCGAGTGAAGTTTCTATGTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAAGTAGATGGCAGTTCTTTGTGTTTACAATGCGACGTGATTGTTCATGTTGGAGGCAAGAGAATGCACAAGAGATATCTTGTGCTGAGGCAGGGAGTTGAGTTTCCTGGGGATAAACAAAACGATGAGGCTGAGAAAGTGAGAGGGCAAAATCAAGATGGGGTTGATAAGCATTCCAATGGAGGAGGAAATTCAAAACGGGGTAACAAAGTGATTGATTTGAACACGTAA 435 43.22 MRIICDSCESAAATLFCAADEAALCVACDAKVHMCNKLASRHVRVGLADPSEVSMCDICENAPAFFYCEVDGSSLCLQCDVIVHVGGKRMHKRYLVLRQGVEFPGDKQNDEAEKVRGQNQDGVDKHSNGGGNSKRGNKVIDLNT 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8219527 8221529 - Sed0009293.1 Sed10g0979 727483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g0979 144 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed10g0979 144 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Sed10g0979 144 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Sed10g0979 144 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270(InterPro)
Sed10g0979 144 MobiDBLite consensus disorder prediction 105 144 - -
Sed10g0979 144 SUPERFAMILY B-box zinc-binding domain 50 86 - -
Sed10g0979 144 FunFam B-box zinc finger protein 19 2 92 - -
Sed10g0979 144 MobiDBLite consensus disorder prediction 122 144 - -
Sed10g0979 144 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed10g0979 144 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Sed10g0979 144 CDD Bbox1_BBX-like 4 47 IPR049808 -
Sed10g0979 144 Gene3D Classic Zinc Finger 1 94 - -
Sed10g0979 144 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 124 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed10g0979 144 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1631 Sed-Chr7:13776784 Sed10g0979 Sed-Chr10:8219527 3.80E-50 dispersed
Sed10g0979 Sed-Chr10:8219527 Sed13g0882 Sed-Chr13:6542274 2.10E-48 dispersed
Sed10g0979 Sed-Chr10:8219527 Sed10g0980 Sed-Chr10:8219527 3.20E-60 tandem
Sed01g2510 Sed-Chr1:18817266 Sed10g0979 Sed-Chr10:8219527 4.90E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39768 PF00643 zf-B_box 4.10E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g0979 - - - 0.0