Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1021 ATGAAGAAGAAGAAGAAGGATAACATTCTGGTTTTGCTGTCATCGGATGAAGAACAATCGTCCACTTCCAAACGGAGCTATACAAAGACGAAGTCGCAACCACCGTTTCCTCGGAAGAGCACTCGTCAAGCGAAGAAGGCTCGACTCCTAGGTTCTCGCTCTTGTTTGCACAAAGATTCTCGCAATGTCGATGAGTTCAACTTATTTGGTGAAGATTTTGATCAAGTCTTTTCTACCTTCAAGGTATCTGCTGGTTCTGAGGGAATTTTGGGAAATGAATTATGGATTGATAAATACAAACCACATTCATTGGAAGAGCTTGCTGTACACAAGAAGAAGGTAGAAGAAGTTAAGGTATGGTTTGAAGAAAGGTTGAGGACACCTAAGGATTATTATGGCAATAATGTTCTTGTCATCACTGGTCCTGCTGGAGTTGGGAAATCCGCAACTATTCACGTAATAGCATCTCATATTGGAGCCAGATTATGTGAATGGGATACACCTACTCCTGTGATTTGGCAAGAACATCTGCATAATTCAAGTGCAGGTATACAATACACATCTAAACTGGATGAGTTTGAAAATTTTATTGGGAGAATGAGAAAGTATGGAGTTATACCTTCGGGCTTTCCCAGAGACTCAAAACAACCGGCCATACTCTTAATAGAAGACCTTCCTTTAACCAATGGGAAGGTTGCTCTTAGAAGACTTCAGAACTGTTTGCATCTTTATGTGCAATCAACTCAAGTTCCAACGGCCATTGTGATTACAGATTGTGCCAAGGCTGAAACGACAGACCTTACCGTTCGGTACTTGGAAGAGGTGCAGCTCTGTCTTGAGAATGCTGGGGCTTGTAAGGTTGCATTTAATCCTATAACGAATAACTCAATTAAAAAAATTGTTTCTAGAATATGTGGTCAAGAGCAATACAATCTGGCAGTTGAACAAATTGATGCAATAGCCAAATCAAGTGGTGGTGATGTGAGACATGCAATCATGTCTTTACAATTATTTTGCCTGAAACCAAGTCAGATATGTTCATTATCATCCAGTGCTCCGGAATCATCAAAAGAAAATAAAGAGGGGCCTTCTATTGTGGTGGATGATGGATTCTCTTATCAATTTGGCCGAGATGAGACTCTCTCTTTATTTCATGCCCTGGGAAAGTTTCTGCACAACAAAAGACATTCTAGAAATGATTTGGTATCAGACAGTGAGTTTTCTGTACAAGAAAAATTATCAAGACTGCCAATTAATATGGATCCTCCAGAAAAGATTCTATGTCAAGCACATGGGCAAGCCAGGCCGATTACTGATTTTCTACATGAAAATGTTCTTGACTTCATGAATGAGGAAGCTGTAGATGATGCTTGGGTTGTGGCTTCATATTTAGGTGATGCTGACACACTCCTTTCTTCTTATGAGGGAATGCTATCCAGGCATAATGATGTTGAAAATATTCTACACTTGGCTGCTGCTTCAGTTGCTGTTCGTGGGGTATTATATGGCAACTCTGATCCATTGTCTTCCAGATGGCATGCCATTCGTAGACCGAAGCTTTGGCAAATTGAGGGATCTTCATTGTTCAATAAGGTGGATTGTTCTTTTGTTTCTCTTTTACTATTAAATTGA 1632 40.01 MKKKKKDNILVLLSSDEEQSSTSKRSYTKTKSQPPFPRKSTRQAKKARLLGSRSCLHKDSRNVDEFNLFGEDFDQVFSTFKVSAGSEGILGNELWIDKYKPHSLEELAVHKKKVEEVKVWFEERLRTPKDYYGNNVLVITGPAGVGKSATIHVIASHIGARLCEWDTPTPVIWQEHLHNSSAGIQYTSKLDEFENFIGRMRKYGVIPSGFPRDSKQPAILLIEDLPLTNGKVALRRLQNCLHLYVQSTQVPTAIVITDCAKAETTDLTVRYLEEVQLCLENAGACKVAFNPITNNSIKKIVSRICGQEQYNLAVEQIDAIAKSSGGDVRHAIMSLQLFCLKPSQICSLSSSAPESSKENKEGPSIVVDDGFSYQFGRDETLSLFHALGKFLHNKRHSRNDLVSDSEFSVQEKLSRLPINMDPPEKILCQAHGQARPITDFLHENVLDFMNEEAVDDAWVVASYLGDADTLLSSYEGMLSRHNDVENILHLAAASVAVRGVLYGNSDPLSSRWHAIRRPKLWQIEGSSLFNKVDCSFVSLLLLN 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8879768 8885472 - Sed0025600.3 Sed10g1021 727525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1021 543 MobiDBLite consensus disorder prediction 13 39 - -
Sed10g1021 543 Gene3D - 293 356 - -
Sed10g1021 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 342 IPR027417 -
Sed10g1021 543 CDD HLD_clamp_RFC 292 345 IPR047854 -
Sed10g1021 543 MobiDBLite consensus disorder prediction 1 44 - -
Sed10g1021 543 Gene3D - 92 274 IPR027417 -
Sed10g1021 543 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 73 527 IPR004582 GO:0000077(PANTHER)|GO:0003682(PANTHER)|GO:0003689(PANTHER)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0033314(PANTHER)
Sed10g1021 543 Pfam Rad17 P-loop domain 91 263 - -
Sed10g1021 543 FunFam RAD17 checkpoint clamp loader component 92 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1021 K06662 - - csv:101219861 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1019 Sed-Chr10:8879514 Sed10g1021 Sed-Chr10:8879768 1.20E-299 dispersed
Sed10g1020 Sed-Chr10:8879768 Sed10g1021 Sed-Chr10:8879768 1.20E-299 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1149 . . . . . . . . . . Cma03g00670 . Car03g00616 . Sed10g1021 . Cpe10g00678 Bhi03g00837 Tan03g2102 Cmetu04g0142 . Hepe04g1610 . . Cla01g01994 . Cec04g1750 Cco04g1815 Clacu01g2110 Cmu01g1987 . . Cone12ag0825 Cone6ag1694 Cone9ag1618 Lsi01g00582 . . Cme08g00950 . Blo06g00275 . . Bpe10g00166 . . . . Cmo03g00695 . . . . . . . . . . . . . . . . . . . . . . Csa06g03348 Chy02g00553 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009016 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34