Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1033 | ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGTTGGTTTCCGTCCTCGGACAACATCCTACTGAGTGGTTCGGATTCAGCCGGCCATCATGAAGGCTTACTATGGTATAAAGATATTGGACAGCATATGAATGGTGAATTTTCAATGGCTGTCGTCCAGGCCAATAACTTACTTGAGGATCATAGCCAGATCGAATCGGGTTCGCTGAGCTTGCTCGAATCTGGGCCATATGGAACCTTTATTGGTGTCTATGATGGTCATGGTGGGCCTGAAGCATCAAATTACGTATACGACAATCTTTTCCAGCATCTAAAAAGGTTCACCTCGGAAGAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACGGAGGAAGGGTTTATTTCTCTAGTGACTAAACAATGGCAGATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGAGTGATCTGTGGTGGCACCCTTTACGTAGCCAACCTTGGCGATTCTCGTGCTGTGCTAGGAAGGCTCGTTCGGGCCACTGAGGAGGTTATTGCCGTTCAGCTATCAGCAGAGCATAATGTGAGCATAGAAGCTGTCAGAAGGGAGATGCATTCTCTACACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGAGACGCCTATCTAAAGAAGGCTGAATTCAACAGGGAACCCTTGTATGGTAAGTTCAGGCTTCGCGAACCATTCACTCGGCCAATATTGAGCTGTGAACCATCAATTTCGGTGCATGAACTTTTGCCACATGATCAATTCATCATATTTGCCTCTGATGGTCTATGGGAGCACCTTAGCAATCAGCAGGCTGTGGATATCATTCGAAGTCACCCGCCTAATGGAAGTGCTAAGCGGTTGGTAAAAGCTGCGATGCTGGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGCAAGAAATCGACCGTGGTGTTCGCCGCCATTTTCACGATGACATCACAGTCATAGTTGTTTTTCTTGACTCAAATCTCGTGAGCAGAGCGAGCTCAGTTCGAGGCCCAACTACATCTTTGAGAGGGAGTGGCGTTATCTTACCAACGAAATCTCTAGTTCCTTAA | 1164 | 45.7 | MLSSLMNFLRACWFPSSDNILLSGSDSAGHHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDHSQIESGSLSLLESGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEEQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYVANLGDSRAVLGRLVRATEEVIAVQLSAEHNVSIEAVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLYGKFRLREPFTRPILSCEPSISVHELLPHDQFIIFASDGLWEHLSNQQAVDIIRSHPPNGSAKRLVKAAMLEAAKKREMRYSDLQEIDRGVRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGSGVILPTKSLVP | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 9117671 | 9121215 | + | Sed0006856.1 | Sed10g1033 | 727537 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1033 | 387 | FunFam | Phosphatase 2C family protein | 36 | 365 | - | - | |
Sed10g1033 | 387 | Gene3D | - | 37 | 365 | IPR036457 | - | |
Sed10g1033 | 387 | ProSiteProfiles | PPM-type phosphatase domain profile. | 47 | 355 | IPR001932 | - | |
Sed10g1033 | 387 | CDD | PP2Cc | 48 | 355 | IPR001932 | - | |
Sed10g1033 | 387 | PANTHER | PROTEIN PHOSPHATASE | 41 | 354 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed10g1033 | 387 | Pfam | Protein phosphatase 2C | 80 | 320 | IPR001932 | - | |
Sed10g1033 | 387 | ProSitePatterns | PPM-type phosphatase domain signature. | 81 | 89 | IPR000222 | GO:0043169(InterPro) | |
Sed10g1033 | 387 | SMART | PP2C_4 | 41 | 353 | IPR001932 | - | |
Sed10g1033 | 387 | SUPERFAMILY | PP2C-like | 56 | 356 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0984 | Sed-Chr4:11371063 | Sed10g1033 | Sed-Chr10:9117671 | 5.90E-137 | dispersed | |
Sed04g0985 | Sed-Chr4:11371063 | Sed10g1033 | Sed-Chr10:9117671 | 5.90E-137 | dispersed | |
Sed04g3089 | Sed-Chr4:41882846 | Sed10g1033 | Sed-Chr10:9117671 | 7.80E-114 | dispersed | |
Sed04g3837 | Sed-Chr4:46784349 | Sed10g1033 | Sed-Chr10:9117671 | 5.80E-165 | dispersed | |
Sed05g2248 | Sed-Chr5:35186638 | Sed10g1033 | Sed-Chr10:9117671 | 9.50E-160 | dispersed | |
Sed05g3510 | Sed-Chr5:43766552 | Sed10g1033 | Sed-Chr10:9117671 | 3.60E-170 | dispersed | |
Sed05g3511 | Sed-Chr5:43766552 | Sed10g1033 | Sed-Chr10:9117671 | 6.00E-119 | dispersed | |
Sed07g2417 | Sed-Chr7:40031912 | Sed10g1033 | Sed-Chr10:9117671 | 6.50E-142 | dispersed | |
Sed10g1033 | Sed-Chr10:9117671 | Sed14g1222 | Sed-Chr14:21410055 | 1.80E-198 | dispersed | |
Sed10g1033 | Sed-Chr10:9117671 | Sed10g1034 | Sed-Chr10:9117934 | 1.80E-222 | tandem | |
Sed10g1033 | Sed-Chr10:9117671 | Sed14g1221 | Sed-Chr14:21410055 | 1.80E-198 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1033 | K01102 | - | csv:101219696 | 705.671 |