Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1034 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGTTGGTTTCCGTCCTCGGACAACATCCTACTGAGTGGTTCGGATTCAGCCGGCCATCATGAAGGCTTACTATGGTATAAAGATATTGGACAGCATATGAATGGTGAATTTTCAATGGCTGTCGTCCAGGCCAATAACTTACTTGAGGATCATAGCCAGATCGAATCGGGTTCGCTGAGCTTGCTCGAATCTGGGCCATATGGAACCTTTATTGGTGTCTATGATGGTCATGGTGGGCCTGAAGCATCAAATTACGTATACGACAATCTTTTCCAGCATCTAAAAAGGTTCACCTCGGAAGAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACGGAGGAAGGGTTTATTTCTCTAGTGACTAAACAATGGCAGATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGAGTGATCTGTGGTGGCACCCTTTACGTAGCCAACCTTGGCGATTCTCGTGCTGTGCTAGGAAGGCTCGTTCGGGCCACTGAGGAGGTTATTGCCGTTCAGCTATCAGCAGAGCATAATGTGAGCATAGAAGCTGTCAGAAGGGAGATGCATTCTCTACACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGAGACGCCTATCTAAAGAAGGCTGAATTCAACAGGGAACCCTTGTATGGTAAGTTCAGGCTTCGCGAACCATTCACTCGGCCAATATTGAGCTGTGAACCATCAATTTCGGTGCATGAACTTTTGCCACATGATCAATTCATCATATTTGCCTCTGATGGTCTATGGGAGCACCTTAGCAATCAGCAGGCTGTGGATATCATTCGAAGTCACCCGCCTAATGGAAGTGCTAAGCGGTTGGTAAAAGCTGCGATGCTGGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGCAAGAAATCGACCGTGGTGTTCGCCGCCATTTTCACGATGACATCACAGTCATAGTTGTTTTTCTTGACTCAAATCTCGTGAGCAGAGCGAGCTCAGTTCGAGGCCCAACTACATCTTTGAGAGGGAGTGGCGTTATCTTACCAACGAAATCTCTAGTTCCTTAA 1164 45.7 MLSSLMNFLRACWFPSSDNILLSGSDSAGHHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDHSQIESGSLSLLESGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEEQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYVANLGDSRAVLGRLVRATEEVIAVQLSAEHNVSIEAVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLYGKFRLREPFTRPILSCEPSISVHELLPHDQFIIFASDGLWEHLSNQQAVDIIRSHPPNGSAKRLVKAAMLEAAKKREMRYSDLQEIDRGVRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGSGVILPTKSLVP 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9117934 9121215 + Sed0006856.2 Sed10g1034 727538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1034 387 FunFam Phosphatase 2C family protein 36 365 - -
Sed10g1034 387 Gene3D - 37 365 IPR036457 -
Sed10g1034 387 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Sed10g1034 387 CDD PP2Cc 48 355 IPR001932 -
Sed10g1034 387 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed10g1034 387 Pfam Protein phosphatase 2C 80 320 IPR001932 -
Sed10g1034 387 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Sed10g1034 387 SMART PP2C_4 41 353 IPR001932 -
Sed10g1034 387 SUPERFAMILY PP2C-like 56 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1034 Sed-Chr10:9117934 Sed14g1221 Sed-Chr14:21410055 1.80E-198 dispersed
Sed10g1033 Sed-Chr10:9117671 Sed10g1034 Sed-Chr10:9117934 1.80E-222 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1034 K01102 - csv:101219696 705.671