Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1038 ATGGCGGAAGAAAGTTCAGAAGAGATGTACCTCCATGGCGATCTCGACCTCAAAATCTTCGAGGCCGTTGAGTTGCCAAATATGGACGTTATATCGGAACATCTTCGTCGGTGCTTCACAGCTTGTGGTACTCTTGACTACTCTGCCACTAAATCCGGTGGAAGCACTGCCCGTTTTGCCGGCCGCGGCGGCGGCGGCCATGGAAAAATCATCATTATTATCGGGACGGTTAAATTCCCTGCTCGGCATATTGCCTCCGGCGAGCTCATTGGTGGGTGGTTTCCAGTTATGGGCTCGAATGGCAAGCCGCCGAAGCCTGAAGAACCCATATACCGATATGGCATTGCGGGAGATCCTGAGCATAAGGGTGTGCGGCATACTTATTTGCCTGTCAGGAAAGGGAGCTGCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCTCAGATTGAATTGGATGGAGGGAATGTTTACAGACAAGAGAAATGTTGGGAGGATATTTGCCATGCTATATCAGAGGCTCATAATATGATTTATATAGTTGGATGGTCAATTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAAGCAGGCCGCTGCCACGAGGCGGGGATTTGACTCTTGGCGAGCTGCTCAAATACAAATCAGAAGAGGGTGTCCCAGTTTTGATGTTGGTATGGGATGATAAAACTTCTCACGATAAGTTCTTCCTCAACACGGCAGGATTGATGCAGACGCATGATGAGGACGCACAAAAGTTTTTCAAGCATTCTTCGGTTATCTGTGTGCTCTCACCTTGCTATCCAAGTGGAAAGCTAAGCTATATGAAACAAAAGGTTGTAGGGAATGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGCGATGGTCGTTATGATACACCTGAGCATCGATTGTTCCGTGACCTTGACACAGTATTTAAGGAGGATTTTCATAATCCTAAAATTCCTCCTGGGACCAATTCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGAAGGACCAGCTGCATATGACTTAGTCATGAACTTCGAGCAACGTTGGAAAAGAGCCATAAGATGGATAGAATTAGGCCTAAGGTGCAAGAGAATTACTCACTGGCGCAACGCGTTGATAAAGATAGAGCATATATCATGGATACTAAGCCCTCACCTGACTATCTTAAAGGATGGTTCAATGGAAGTTCCAGAGGATGACCCTAAATTATATATTTTCCGATCGATCGACTCTGGATCAGTTAAAGGCTTTCCAAAAGATGTCCATCTTGCCGAGTTGCAGAATCTCGTATGTGCAAAAAACTTGGCTATAGAGAAAAGCATTGAATTGGCATATATTCAAGCCATCAGATCAGCACAACATTTCATTTACATTGAAAACCAGTATTTTATTGGATCATCGTATGGATGGCAAGGATTTAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATAGCAACCAAAATTCGAGCCAAGGAAAGATTTGTTGTATATATTATTATACCAATGTGGCCCGAAGGGGATCCGAATAGCGGTCCCATGCAAGAGATTCTTTATTGGCAGATCAACTGGATTTGTCACCCTCATGACTATCTAAATTTCTACTGTCTTGGTAAACGGGAAGAAATTCCTGGGAATGGACCGACAACTAACAATGCAACGGTATCTAATTCAATCAAACACAAACGGTTTATGATTTACGTTCATGCCAAGGGTATGATAGTCGATGATGAATATGTAATTATTGGATCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAGGACACCGAGATAGCCATGGGCGCCTATCAGCCGCATCACTCATGGGCGAAGAATAAGAAACACCCACATGGTCAGATTTACGGGTACAGAATGTCGTTATGGAGCGAGCATCTCGGGCTGCTCGATTCTTGTTTTAAAGAGCCAGAGACTTTAGAATGTGTGAGAAAAGTCGATGGGATTGCTGAGGATAACTGGATGAGATTTGCAGCAGATGAATTCTCGACATTGCGGGGCCACCTCCTGAGGTATCCGTTGCTCGTGGACGGGGGGAAGGTAATGGGGTCCCATTCAATTAAAATCCCTGATGTTGTGACCACATAG 2214 44.63 MAEESSEEMYLHGDLDLKIFEAVELPNMDVISEHLRRCFTACGTLDYSATKSGGSTARFAGRGGGGHGKIIIIIGTVKFPARHIASGELIGGWFPVMGSNGKPPKPEEPIYRYGIAGDPEHKGVRHTYLPVRKGSCMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICHAISEAHNMIYIVGWSIFHKVKLVREPSRPLPRGGDLTLGELLKYKSEEGVPVLMLVWDDKTSHDKFFLNTAGLMQTHDEDAQKFFKHSSVICVLSPCYPSGKLSYMKQKVVGNVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFKEDFHNPKIPPGTNSPRQPWHDLHCRIEGPAAYDLVMNFEQRWKRAIRWIELGLRCKRITHWRNALIKIEHISWILSPHLTILKDGSMEVPEDDPKLYIFRSIDSGSVKGFPKDVHLAELQNLVCAKNLAIEKSIELAYIQAIRSAQHFIYIENQYFIGSSYGWQGFKNAGADNLIPMELALKIATKIRAKERFVVYIIIPMWPEGDPNSGPMQEILYWQINWICHPHDYLNFYCLGKREEIPGNGPTTNNATVSNSIKHKRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHHSWAKNKKHPHGQIYGYRMSLWSEHLGLLDSCFKEPETLECVRKVDGIAEDNWMRFAADEFSTLRGHLLRYPLLVDGGKVMGSHSIKIPDVVTT 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9182269 9194478 - Sed0020508.1 Sed10g1038 727542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1038 737 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 285 320 IPR001736 GO:0003824(InterPro)
Sed10g1038 737 Pfam Phospholipase D Active site motif 601 626 IPR001736 GO:0003824(InterPro)
Sed10g1038 737 Gene3D Endonuclease Chain A 448 652 - -
Sed10g1038 737 SUPERFAMILY Phospholipase D/nuclease 129 386 - -
Sed10g1038 737 PIRSF PLD_plant 69 736 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed10g1038 737 PIRSF PLD_plant 1 59 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed10g1038 737 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 599 626 IPR001736 GO:0003824(InterPro)
Sed10g1038 737 PANTHER PHOSPHOLIPASE D 107 724 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed10g1038 737 Gene3D Endonuclease Chain A 155 390 - -
Sed10g1038 737 Pfam Phospholipase D C terminal 673 734 IPR024632 -
Sed10g1038 737 SMART pld_4 285 320 IPR001736 GO:0003824(InterPro)
Sed10g1038 737 SMART pld_4 599 626 IPR001736 GO:0003824(InterPro)
Sed10g1038 737 FunFam Phospholipase D delta 157 399 - -
Sed10g1038 737 SUPERFAMILY Phospholipase D/nuclease 469 682 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1038 Sed-Chr10:9182269 Sed11g1113 Sed-Chr11:26832157 2.00E-243 dispersed
Sed10g1038 Sed-Chr10:9182269 Sed11g1112 Sed-Chr11:26832157 7.10E-273 wgd
Sed10g1038 Sed-Chr10:9182269 Sed14g1225 Sed-Chr14:21447685 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1038 K01115 - csv:101217251 1172.92