Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1041 ATGAGTTCTTGTGTGTTTCGTGACTCCAGCTTCCAGCCGGGGCACAGCGATGCAGAACAATCAATTCCCAACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACCGCAGCCACCATGGTCGGCCTCCAAACCGTTCCAGGGCTGGTCATCCTTTATGGCAGCATGGTGAAAAAAAAATGGGCTGTCAACTCTGCCTTCATGGCTCTCTATGGCTTTGCTGCCGTGCTCGTCTGTTGGGTGCTGTGGGCACATCATATGGCATTCGGCAATAAATTGCTCTGGATTGTCGGCAAGCCTGAAGCAGCCCTGTCTGAAAGGTACCTTCTTTCAAAGTCTACACAAGGCTGTTTTCCAATGGCTGACTACGTGTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTCGTGTTGCTCGCCGGATCCTTGCTGGGAAGGATGAACTTTTATGCGTGGATGCTTTTTGTTCCAATGTGGTTAACTCTTTGTTACACTGTTGGGGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTATGCTGGCGGCTATGTCATTCATCTTTCTTCAGGGGTTGCTGGTTTCACTGCTGCTTACTGGGTTGGGCCACGACACTCCAAGGACAGGCAGAACTTCCCTCCAAACAACATACTGCACATGGTGTGCGGTGCGGGGTTTCTTTGGCTGGGATGGACTGGATTCAATGGAGGAGCACCATTTTCAGCGGGACAAATTACATCGCTAGCCATTTTGAACACACATGTCTGCACCGCAACAAGTCTCTTGATTTGGGTTTCAATGGACATCATTGTATACAAGAAAAGCTCTGTGATTGGTGCGGTTCAAGGGATTATTACTGGCCTTGTCTGCATCACTCCTGCCGCAGGGCTCGTGGGCACGGTCGCAGCTGTGGTGATGGGTGTGTTTGCTGGCTTGGTCCCATGGTACACCATGATGGTGCTACACAGGAGGCTGGCATTTCTTCAGTGTGTCGATGATACACTGGGTGTTTTCCACACACACGCTGTGGCTGGTTCCATGGGAGGACTCCTCACAGGTTTCTTTGCCAAACCCAGCCTCCTGAGAATGATGTATCCAGATTCTCTATACGGTCCAGGCTTCCTGTACGCCATCTCTGATAGAAAGATTAAAGATGGTCTCAGACAAATTGGCATCCAAATCGCTGGAGCAGTGTTTATCACCCTTTGGAACGTCATATTTACAAGCATTATATGTTACCTGATAAGCCATGTTGTAAGCTTAAGGATGAAAGAAGAGGACCTCGAGATTGGTGACGATGCTGTTCATGGAGAAGAACCCTATGCATTGTGGGGTGACGAGCCAGATTTTGCAGTAAATCTGGTTGCTGCTGTGGTGACTCCAGCTCAGGAGTCTTGGAGGCAGAATTTCATAGTATAG 1428 48.95 MSSCVFRDSSFQPGHSDAEQSIPNWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHHMAFGNKLLWIVGKPEAALSERYLLSKSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSKDRQNFPPNNILHMVCGAGFLWLGWTGFNGGAPFSAGQITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPAAGLVGTVAAVVMGVFAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYGPGFLYAISDRKIKDGLRQIGIQIAGAVFITLWNVIFTSIICYLISHVVSLRMKEEDLEIGDDAVHGEEPYALWGDEPDFAVNLVAAVVTPAQESWRQNFIV 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9215662 9217377 - Sed0017453.1 Sed10g1041 727545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1041 475 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed10g1041 475 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed10g1041 475 PANTHER AMMONIUM TRANSPORTER MEP2 21 453 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Sed10g1041 475 Gene3D Ammonium transporter AmtB like domains 6 447 IPR029020 -
Sed10g1041 475 SUPERFAMILY Ammonium transporter 25 425 - -
Sed10g1041 475 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Sed10g1041 475 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Sed10g1041 475 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Sed10g1041 475 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Sed10g1041 475 MobiDBLite consensus disorder prediction 1 23 - -
Sed10g1041 475 Pfam Ammonium Transporter Family 32 443 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1588 Sed-Chr3:10090648 Sed10g1041 Sed-Chr10:9215662 2.80E-147 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1041 K03320 - csv:101218977 825.083