Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1066 ATGGAGTTTTCCGACGAGAACAATCCCAACTTGATCAAACCCACTGGAGTTCTTCTAAAAGGGCTTAGCCAGGAGATTAGTAGTATCAATAATCGAAGAGCTCTTAATGACATTAATCAGAATTCTGCTGTGAATCAAGCTTACCCTTGTGTTGTAAACAAGAGACTTCTCTTAGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGTTGATCTATTTCATAGACCCATTACGAGGAAGTTTGCTGCTCAAATTGCGGGTAGTCAACAGCTTCATCAGCCACAAGAAAATAATAAGCCAAACCCATTTCTTACAAACTCAAATGCGTTTGGACATTCAATATTTGTAGACGAGGATTGCAAAACAGTAGAAAATAATGACCATCCAGTTCCCATGTTCTTGGAGAAATCAGAACCATCATTGCCTCAGGAAACAACCCAAATGGAGGAGGTTGAAATGGAGGATATCACAGACGACGAAGACGACGACCCGGTAGTCGACATTGATCTTGTGGATTCTGAGAACCCACTTGCTGTTGCCGACTATGTCGACGATCTTTACGCACACTACAGAAAGATAGAGAATTCCAGCTGTGTTTCTCCAATTTACATGACAAAACAAGGTGACATTAATGAGAAAATGAGAGCTATACTAATTGATTGGCTCATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACTGTGAATTTGATAGACAGATTTTTGTCACAAAAAACAGTGATGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTTTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCTACAAAGGAAGTTCTTGAAATGGAGACAGTAATGCTCAACTGTTTACAGTTCAATATGTCAGTTCCCACACCCTTTGTTTTCCTCCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTGAGCTAATGGCATTCTTCTTGATCGAGCTCTCGCTCGTGGAGTATGAAATGCTCAGATTTCCACCCTCTCTGCTGGCAGCGGCTGCGACTTACACAGCTCAGTGTACTCTCACTGGTGTCACAGGGTGGAGCCGAACCTGCGAGTGGCATTCTAGCTACTCAGAAGATCAGCTCCAAGAATGTTCAAGACTAATGGTGGGGTTCCATCAGAAGGCGGCAACCGGGAAGCTCACAGGAGTTCATAGGAAGTACTGTACATCCAAATTTAACTACACGGCAAAATGTGAAGCGGCACATTTTCTTTTGCAGACTCAGCAATAA 1314 42.09 MEFSDENNPNLIKPTGVLLKGLSQEISSINNRRALNDINQNSAVNQAYPCVVNKRLLLGKQEICEKKQVDLFHRPITRKFAAQIAGSQQLHQPQENNKPNPFLTNSNAFGHSIFVDEDCKTVENNDHPVPMFLEKSEPSLPQETTQMEEVEMEDITDDEDDDPVVDIDLVDSENPLAVADYVDDLYAHYRKIENSSCVSPIYMTKQGDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVMRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSTKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVTGWSRTCEWHSSYSEDQLQECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEAAHFLLQTQQ 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9737830 9740642 - Sed0001514.1 Sed10g1066 727570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1066 437 Gene3D - 184 424 - -
Sed10g1066 437 SMART Cyclin_C_2 312 429 IPR004367 -
Sed10g1066 437 PANTHER CYCLINS 151 416 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed10g1066 437 Pfam Cyclin, C-terminal domain 312 427 IPR004367 -
Sed10g1066 437 FunFam G2/mitotic-specific cyclin 198 305 - -
Sed10g1066 437 FunFam G2/mitotic-specific cyclin-1 306 424 - -
Sed10g1066 437 SUPERFAMILY Cyclin-like 173 309 IPR036915 -
Sed10g1066 437 SMART cyclin_7 316 398 IPR013763 -
Sed10g1066 437 SMART cyclin_7 219 303 IPR013763 -
Sed10g1066 437 Pfam Cyclin, N-terminal domain 184 310 IPR006671 -
Sed10g1066 437 PIRSF Cyclin_A_B_D_E 15 437 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed10g1066 437 ProSitePatterns Cyclins signature. 214 245 IPR048258 -
Sed10g1066 437 SUPERFAMILY Cyclin-like 311 428 IPR036915 -
Sed10g1066 437 Gene3D - 198 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2437 Sed-Chr1:18169120 Sed10g1066 Sed-Chr10:9737830 1.90E-119 dispersed
Sed10g1066 Sed-Chr10:9737830 Sed14g1251 Sed-Chr14:21622118 2.30E-207 dispersed
Sed10g1066 Sed-Chr10:9737830 Sed10g1067 Sed-Chr10:9737830 7.20E-164 tandem
Sed04g3556 Sed-Chr4:44941154 Sed10g1066 Sed-Chr10:9737830 2.00E-53 transposed
Sed10g1066 Sed-Chr10:9737830 Sed14g1250 Sed-Chr14:21622118 9.20E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1066 K21777 - csv:101216622 715.687