Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1070 ATGCCTGCTTGGTGGGTTCGAAAATTCACTAAGAACAGCAAGGACCATCACAATCACCTCTTATCCAATTCTTCTCCTCCAAGAACTGCGGGTAAGAGGTTCACTGATAACCCTAAGAGCTTTGATGCTGTGTTTGATGCGATTCGCTCTCGCAGTTCTCCCTGCTCTACCCGGAATCTGCCCGCCGACAAGAGCCTTCCTCTTCCTCGACCTGCTTCTGCTGCTTCCGCCTCTGAGATTGATCTTGGACTCGGGATTGGATCTGGGTGTTCCTCCGTTTCCAGTGTTAGCTCCTCTGGCTTCTCGGATGATCATCCTTCTGCCCAAGAACACCTCCCCTTTGGACCTTACAGAGGGTGTGCTGATACCAGAATAGAGACAAAGCCTAGAAGTCCAGGTCCGGGATCAAGAGGACCCCCAAGTCCTACATCTCCTCTCAACCGGTTCTATGGCATGAGTCTTGAGTCTCCAACAGGCAAGTTAGATGACGGGAAGAGTCGATGTCATAAGCTCCCGCTTCCTCCAAGCAATCCCACAAGCCCTTCTTCCTTGACCACCACAAAAGCTATCAATCTCGGTGATAGCAATGCGGCTACGCAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACTTTTGGGCACGTTTACCTTGGATTTAACAGTGTAAGTGGTCAAATGTGTGCAATTAAGGAGGTCAAGGTTATAAGTGATGACTCGACATCAAAGGAATGTCTCAAGCAATTGAATCAGGAGATAACTGTGCTCGGTCAGCTGTCGCATCCAAACATCGTCCAGTACTATGGTAGTGAAATGGGTGATGAATCGCTCTCGGTCTTTTTGGAATACGTCTCTGGTGGTTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCGGTTATAAGAAATTATACCCGGAAGATTCTTTCTGGGCTTGCTTATCTGCATGGAAGAAATACAGTGCATAGGGACATAAAAGGGGCGAATATCTTGGTGGATCCAAATGGCGGGGTCAAGTTAGTTGACTTCGGCATGGCAAAACATATAACAAATTGTACTTCGATGCTTTCTTTCAAAGGCAGTCCTTATTGGATGGCCCCAGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGATATTTGGAGTTTAGGGTGTACGGTTATAGAAATGGCAACATCTAAACCGCCATGGAGCAAATATGAAGGGGTAGCTGCCATTTTCAAAATTGGAAATAGCAAAGATGTTCCCGAAATTCCAGACCATCTCTCTTATGATGCTAAAACATTTGTGCAATTATGCTTGCAACGGGACCCGTCTGCGCGTCCTTCTGCTGCAGAACTGCTGAATCATCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATTTCAACTTTTCCATTGATGTATTTCCTTTTAGCTTCGATGGAAGCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATTTGTGATGGAGAATACATGACAAGCCCAACAATTTCTTCCAGAGCTCCAAGGAGTCCTAGGGAAAATGTAAGAATGATCACGTCCTTGCCTGTCTCTCCAAGTTCAAGTCCATTACGGTCGTATGGTCCCACACACCAGAGCTGTTATCTTTCACCACCCCACACATTGTACATGGGGTTGGGTCAAAGCCATCACAATGTGAATGAATATGCATATAACACGAGACCGAACACATTGTTCACCCTTGACCCTTCACGAGATTCATCGCTATCGAAGGTGCAGACTCATGGTGGATCGCCAAGAAGACCTCTTTGA 1818 46.04 MPAWWVRKFTKNSKDHHNHLLSNSSPPRTAGKRFTDNPKSFDAVFDAIRSRSSPCSTRNLPADKSLPLPRPASAASASEIDLGLGIGSGCSSVSSVSSSGFSDDHPSAQEHLPFGPYRGCADTRIETKPRSPGPGSRGPPSPTSPLNRFYGMSLESPTGKLDDGKSRCHKLPLPPSNPTSPSSLTTTKAINLGDSNAATQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVKVISDDSTSKECLKQLNQEITVLGQLSHPNIVQYYGSEMGDESLSVFLEYVSGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGGVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVIEMATSKPPWSKYEGVAAIFKIGNSKDVPEIPDHLSYDAKTFVQLCLQRDPSARPSAAELLNHPFVQDAVTPRASDFNFSIDVFPFSFDGSQTPPLLDRHPNRKSISICDGEYMTSPTISSRAPRSPRENVRMITSLPVSPSSSPLRSYGPTHQSCYLSPPHTLYMGLGQSHHNVNEYAYNTRPNTLFTLDPSRDSSLSKVQTHGGSPRRPL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9861394 9865973 + Sed0004847.1 Sed10g1070 727574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1070 605 ProSiteProfiles Protein kinase domain profile. 203 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1070 605 MobiDBLite consensus disorder prediction 95 187 - -
Sed10g1070 605 MobiDBLite consensus disorder prediction 582 605 - -
Sed10g1070 605 MobiDBLite consensus disorder prediction 582 597 - -
Sed10g1070 605 CDD STKc_MEKK1_plant 202 459 - -
Sed10g1070 605 Pfam Protein kinase domain 204 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1070 605 FunFam Mitogen-activated protein kinase kinase kinase 201 482 - -
Sed10g1070 605 SUPERFAMILY Protein kinase-like (PK-like) 201 549 IPR011009 -
Sed10g1070 605 SMART serkin_6 203 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1070 605 Gene3D Transferase(Phosphotransferase) domain 1 199 474 - -
Sed10g1070 605 MobiDBLite consensus disorder prediction 52 71 - -
Sed10g1070 605 ProSitePatterns Protein kinases ATP-binding region signature. 209 232 IPR017441 GO:0005524(InterPro)
Sed10g1070 605 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 466 IPR050538 -
Sed10g1070 605 MobiDBLite consensus disorder prediction 13 37 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1693 Sed-Chr8:32027785 Sed10g1070 Sed-Chr10:9861394 1.20E-75 dispersed
Sed08g1694 Sed-Chr8:32027785 Sed10g1070 Sed-Chr10:9861394 1.10E-75 dispersed
Sed10g1070 Sed-Chr10:9861394 Sed14g0232 Sed-Chr14:2566224 1.40E-258 dispersed
Sed10g1070 Sed-Chr10:9861394 Sed10g1071 Sed-Chr10:9861394 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79845 PF00069 Pkinase 1.80E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1070 K04421 - csv:101203907 876.315