Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1071 ATGCCTGCTTGGTGGGTTCGAAAATTCACTAAGAACAGCAAGGACCATCACAATCACCTCTTATCCAATTCTTCTCCTCCAAGAACTGCGGGTAAGAGGTTCACTGATAACCCTAAGAGCTTTGATGCTGTGTTTGATGCGATTCGCTCTCGCAGTTCTCCCTGCTCTACCCGGAATCTGCCCGCCGACAAGAGCCTTCCTCTTCCTCGACCTGCTTCTGCTGCTTCCGCCTCTGAGATTGATCTTGGACTCGGGATTGGATCTGGGTGTTCCTCCGTTTCCAGTGTTAGCTCCTCTGGCTTCTCGGATGATCATCCTTCTGCCCAAGAACACCTCCCCTTTGGACCTTACAGAGGGTGTGCTGATACCAGAATAGAGACAAAGCCTAGAAGTCCAGGTCCGGGATCAAGAGGACCCCCAAGTCCTACATCTCCTCTCAACCGGTTCTATGGCATGAGTCTTGAGTCTCCAACAGGCAAGTTAGATGACGGGAAGAGTCGATGTCATAAGCTCCCGCTTCCTCCAAGCAATCCCACAAGCCCTTCTTCCTTGACCACCACAAAAGCTATCAATCTCGGTGATAGCAATGCGGCTACGCAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACTTTTGGGCACGTTTACCTTGGATTTAACAGTGTAAGTGGTCAAATGTGTGCAATTAAGGAGGTCAAGGTTATAAGTGATGACTCGACATCAAAGGAATGTCTCAAGCAATTGAATCAGGAGATAACTGTGCTCGGTCAGCTGTCGCATCCAAACATCGTCCAGTACTATGGTAGTGAAATGGGTGATGAATCGCTCTCGGTCTTTTTGGAATACGTCTCTGGTGGTTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCGGTTATAAGAAATTATACCCGGAAGATTCTTTCTGGGCTTGCTTATCTGCATGGAAGAAATACAGTGCATAGGGACATAAAAGGGGCGAATATCTTGGTGGATCCAAATGGCGGGGTCAAGTTAGTTGACTTCGGCATGGCAAAACATATAACAAATTGTACTTCGATGCTTTCTTTCAAAGGCAGTCCTTATTGGATGGCCCCAGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGATATTTGGAGTTTAGGGTGTACGGTTATAGAAATGGCAACATCTAAACCGCCATGGAGCAAATATGAAGGGGTAGCTGCCATTTTCAAAATTGGAAATAGCAAAGATGTTCCCGAAATTCCAGACCATCTCTCTTATGATGCTAAAACATTTGTGCAATTATGCTTGCAACGGGACCCGTCTGCGCGTCCTTCTGCTGCAGAACTGCTGAATCATCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATTTCAACTTTTCCATTGATGTATTTCCTTTTAGCTTCGATGGAAGCCAGACTCCGGTAAGCCTCAGACATTTCTTAAGTTACTTAGAATCACAAAGCCGAGATGTAAAGGAAAATCAGAATAACTTGGATTTGGAGGACCTCTTGGATTGTAACTATTTAAAATTGACCATGGAGTTGAAATCTTTGAAACTTTATATGCAGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATTTGTGATGGAGAATACATGACAAGCCCAACAATTTCTTCCAGAGCTCCAAGGAGTCCTAGGGAAAATGTAAGAATGATCACGTCCTTGCCTGTCTCTCCAAGTTCAAGTCCATTACGGTCGTATGGTCCCACACACCAGAGCTGTTATCTTTCACCACCCCACACATTGTACATGGGGTTGGGTCAAAGCCATCACAATGTGAATGAATATGCATATAACACGAGACCGAACACATTGTTCACCCTTGACCCTTCACGAGATTCATCGCTATCGAAGGTGCAGACTCATGGTGGATCGCCAAGAAGACCTCTTTGA 1965 45.14 MPAWWVRKFTKNSKDHHNHLLSNSSPPRTAGKRFTDNPKSFDAVFDAIRSRSSPCSTRNLPADKSLPLPRPASAASASEIDLGLGIGSGCSSVSSVSSSGFSDDHPSAQEHLPFGPYRGCADTRIETKPRSPGPGSRGPPSPTSPLNRFYGMSLESPTGKLDDGKSRCHKLPLPPSNPTSPSSLTTTKAINLGDSNAATQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVKVISDDSTSKECLKQLNQEITVLGQLSHPNIVQYYGSEMGDESLSVFLEYVSGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGGVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVIEMATSKPPWSKYEGVAAIFKIGNSKDVPEIPDHLSYDAKTFVQLCLQRDPSARPSAAELLNHPFVQDAVTPRASDFNFSIDVFPFSFDGSQTPVSLRHFLSYLESQSRDVKENQNNLDLEDLLDCNYLKLTMELKSLKLYMQPLLDRHPNRKSISICDGEYMTSPTISSRAPRSPRENVRMITSLPVSPSSSPLRSYGPTHQSCYLSPPHTLYMGLGQSHHNVNEYAYNTRPNTLFTLDPSRDSSLSKVQTHGGSPRRPL 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9861394 9865973 + Sed0004847.2 Sed10g1071 727575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1071 654 ProSiteProfiles Protein kinase domain profile. 203 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1071 654 MobiDBLite consensus disorder prediction 95 187 - -
Sed10g1071 654 CDD STKc_MEKK1_plant 202 459 - -
Sed10g1071 654 SMART serkin_6 203 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1071 654 SUPERFAMILY Protein kinase-like (PK-like) 201 594 IPR011009 -
Sed10g1071 654 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 466 IPR050538 -
Sed10g1071 654 MobiDBLite consensus disorder prediction 631 646 - -
Sed10g1071 654 MobiDBLite consensus disorder prediction 52 71 - -
Sed10g1071 654 Pfam Protein kinase domain 204 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1071 654 ProSitePatterns Protein kinases ATP-binding region signature. 209 232 IPR017441 GO:0005524(InterPro)
Sed10g1071 654 FunFam Mitogen-activated protein kinase kinase kinase 201 482 - -
Sed10g1071 654 Gene3D Transferase(Phosphotransferase) domain 1 199 474 - -
Sed10g1071 654 MobiDBLite consensus disorder prediction 631 654 - -
Sed10g1071 654 MobiDBLite consensus disorder prediction 13 37 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1071 Sed-Chr10:9861394 Sed14g0232 Sed-Chr14:2566224 8.80E-251 dispersed
Sed10g1070 Sed-Chr10:9861394 Sed10g1071 Sed-Chr10:9861394 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79846 PF00069 Pkinase 2.10E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1071 K04421 - csv:101203907 853.588