Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1110 ATGTTTTTTTCCAAATCCAAACCTTCCAATTGGACTACTAATTCACCAAATCCTCCTCGTTATCGAGGCGTACGCCGCCGAAGCTCCGGGAAATGGGTGTCGGAGATTCGGGAGCCGAGGAAGCCCAATAGGATTTGGTTGGGAACTTTCCCTACTCCTGAAATGGCTGCGGTTGCTTACGACGTGGCGGCGTTGGCCCTCAAGGGTCCTGACACCGACCTCAACTTTCCAAACTTTGTGTCTTCATTGCCAAGACCGGCCTCTACCTCTGCACATGACATTCAGGCTGCGGCTACATCTGCGGCTGCAGCGATAGGAGCGGCGGCAGCTGCAATAGAGTCAGACGATAGTCTCTTGAGTGAAAGTAGAGAGAATGAAGAAGAATATGAAGGGTGTGTGGAGGAAGTAGAGAGATTTGTTGATGAAGATATGATATTTGATATGCCAAATATTTTGATGAACATGGCTGAAGGAATGCTTCTCACTCCTCCACCTTTCAACTTCAACATTAATGCTTCAAATGATTTGGATTATGCTTCAGCCTATGCTCAAGATACCCTTTGGGATTTCTCTAATTAA 579 46.8 MFFSKSKPSNWTTNSPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGPDTDLNFPNFVSSLPRPASTSAHDIQAAATSAAAAIGAAAAAIESDDSLLSESRENEEEYEGCVEEVERFVDEDMIFDMPNILMNMAEGMLLTPPPFNFNINASNDLDYASAYAQDTLWDFSN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12217342 12217920 - Sed0026321.1 Sed10g1110 727614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1110 192 CDD AP2 19 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 SMART rav1_2 20 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 FunFam Ethylene-responsive transcription factor 2 20 78 - -
Sed10g1110 192 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677(InterPro)
Sed10g1110 192 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 156 IPR051032 -
Sed10g1110 192 MobiDBLite consensus disorder prediction 1 28 - -
Sed10g1110 192 Pfam AP2 domain 19 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1110 192 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2857 Sed-Chr8:39791832 Sed10g1110 Sed-Chr10:12217342 6.20E-28 dispersed
Sed10g1110 Sed-Chr10:12217342 Sed13g0173 Sed-Chr13:1119894 6.60E-29 dispersed
Sed10g1110 Sed-Chr10:12217342 Sed02g0556 Sed-Chr2:43184175 9.50E-44 wgd
Sed10g1110 Sed-Chr10:12217342 Sed04g1457 Sed-Chr4:29207524 3.00E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39774 PF00847 AP2 1.20E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1110 - - - 0.0