Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1115 | ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAAAGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGATCTCGTCATTCAGATTTTTTATCAGACAAAGATCGGAAACTTTCTGCATTGAAATTTGGTTTCAAGGGATCTCTAGAGGATGATATCAATCATCTTTTTGAGTCTATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCACAAGTAGAGGTAAACTCACTGAGAAAAAGTACACTAAAGAAGCCGATAGCTGTTGGCATGCCTCGCTCACCAGGTATTGGTACTTCTGAGTCTAGTAGTCTGAAGCAAGCCCTCAGGGAACTATCCCTTTCAAAGGCATCTGAAATGGCTTCTATGAAAAGATCATCAAAATTAGCTAGCTCTTCAAGGCTCTCGGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTTATGGTTGAGGCTACCGAGTCTTGCTCTTCTTCAGATTATGGTAAGGGAGGGCGTGTGGTTCAAATATCCCTAGTTCCAGAGGAAGAAAAGTTGAACTCTGAAAAGAGACTTGAGCATGTCCAGGCATCTACTGTTAAGTCACCGGCTAAAAATGCTCAATCTTCTCATCGGTTACTAGTTGCAAAAGCACAAAGTTCTGTTGATGTTGTTACAATGGGACAAAAAGTCAATACCACTTTGTCAAGGAAAGTTGGATCTCAGACATTAAAGGCAGAGCTAGAGAAGGAAGAGGAGTCCATTACTCCTCCATCCTTATCGGCTTGCACCATTGGCAAGGTTCTAGAGAAGAAGAAGAAGAAAATTCTTGCCTCAAGCAGGGTAGCAGATAAAGCATCAGCATCTAACGTAGGACGAAAAGGTAGGTTGCAAACTGCATCATCATCTAAGTTGGGTAGTGGCAATAAGGTAGGCAAGTTATCTAGAAGTAACTCCCGTTCTGTTAAACCAGTTATTAGGAACAAGGGGCTGGCAAAGAAAAAAGTCAAACAGGATTCGAGTTCTCCAACATGTAGTGCAAGCACATACAATGCAGTCAATAGTGATATCCATCCTAATAAAAAGAAGTTGATATGTGAGAGGTGCCATTGCGCATTGAATAGTGCAGCTACAGACTCAAAGAAGGAATCTGCATCCCAGTTTAGTGGCCTTGTTTCTGACGTAAACATAGCTAGTACAAAATCTGGCTTTAACAAATCAGGCATCAAAGCGGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACCAAGGTACAAGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAATGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGTGCATGGTGGATCCAGTAATGGTAACAGACCTCATATGTCGAAAGATGTAAAGTGGGAAGCCATACGCCATGGACAATTGCAGCATGGGGCCCTCAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAGTTGCCTATTTGCCATTAAGGTCATGGACAATGAGTTTCTTGCAAGACGGAAGAAAATGCCTAGAGCGCAAACTGAGAGTGAAATTCTGAGAATGCTAGATCATCCATTCCTTCCAACACTTTTTGTTCAATTTACTTCAGATAATCTATCATGTCTTGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGACCGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGCCACATAATGCTTACCGACTTTGACCTGTCGCTTCGGTGCACGGTCAGTCCGACACTCCTAAAATTGTCATCTTTCAATGCAGACTTGGTGAGAACATCAGGTCCGTGTACAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCACCATGTCAAGTACCATGCTTCAGCCCAAGGTTCTTACCTGCTGCTTCCAGAACAAGGAAGTCAAAACCTGACCTCATAACGCAGTTGAGGTCATTGCCCCAGCTCGTTGCTGAACCCACTGATGCACGATCGAATTCTTTTGTAGGCACTCACGAATACTTGGCTCCCGAGATCATTAAAGGAGAGGGTCATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTCTATGAACTTCTGTATGGTAGCACCCCTTTCAAAGGTTCCAATAATGAAGAAACATTAGCCAATGTAGTATTGCAGAGCCTCAGCTTTCCCGACACCCCAATGGTTAGTTTCCAAGCAAGGGACCTTATCCGAGGGCTGTTGGTAAAAGAACCCGGAAATCGATTTGGGACCGATAAAGGGGCTGCAGCGATTAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGCTGTGCAATTCCTCCCGAACTTCCGGACTCGAGCGATATGGACATTCCAAGCATGATTTCTCAACAAAACAATTTCAGGTATTTGGAAAGCAAATCCAATGGAGAGCACTTGGAGTTCGAATTGTTTTAG | 2613 | 43.02 | MGSGTCEIVEAKEEIKPVQSKVGSRHSDFLSDKDRKLSALKFGFKGSLEDDINHLFESISIKNASKSLGHSQVEVNSLRKSTLKKPIAVGMPRSPGIGTSESSSLKQALRELSLSKASEMASMKRSSKLASSSRLSEAGRIKTLYNSVMVEATESCSSSDYGKGGRVVQISLVPEEEKLNSEKRLEHVQASTVKSPAKNAQSSHRLLVAKAQSSVDVVTMGQKVNTTLSRKVGSQTLKAELEKEEESITPPSLSACTIGKVLEKKKKKILASSRVADKASASNVGRKGRLQTASSSKLGSGNKVGKLSRSNSRSVKPVIRNKGLAKKKVKQDSSSPTCSASTYNAVNSDIHPNKKKLICERCHCALNSAATDSKKESASQFSGLVSDVNIASTKSGFNKSGIKADGKASDVRVKRNTKVQDKGEFSQSSKSSQCEYSSSTTSIISDDSNVHGGSSNGNRPHMSKDVKWEAIRHGQLQHGALSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTESEILRMLDHPFLPTLFVQFTSDNLSCLVMEYCPGGDLHVLRQKQLDRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKLSSFNADLVRTSGPCTDSSCAEPFCIEPPCQVPCFSPRFLPAASRTRKSKPDLITQLRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGSTPFKGSNNEETLANVVLQSLSFPDTPMVSFQARDLIRGLLVKEPGNRFGTDKGAAAIKQHPFFEGLNWALIRCAIPPELPDSSDMDIPSMISQQNNFRYLESKSNGEHLEFELF | 870 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12766537 | 12771856 | - | Sed0001335.2 | Sed10g1115 | 727619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1115 | 870 | PANTHER | FLIPPASE KINASE 1-RELATED | 312 | 848 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed10g1115 | 870 | MobiDBLite | consensus disorder prediction | 399 | 462 | - | - | |
Sed10g1115 | 870 | MobiDBLite | consensus disorder prediction | 285 | 317 | - | - | |
Sed10g1115 | 870 | SUPERFAMILY | Protein kinase-like (PK-like) | 464 | 837 | IPR011009 | - | |
Sed10g1115 | 870 | MobiDBLite | consensus disorder prediction | 405 | 421 | - | - | |
Sed10g1115 | 870 | FunFam | serine/threonine-protein kinase D6PK-like | 570 | 637 | - | - | |
Sed10g1115 | 870 | ProSiteProfiles | Protein kinase domain profile. | 486 | 819 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g1115 | 870 | Pfam | Protein kinase domain | 716 | 819 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g1115 | 870 | Pfam | Protein kinase domain | 487 | 637 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g1115 | 870 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 607 | 619 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed10g1115 | 870 | FunFam | Serine/threonine-protein kinase D6PK-like | 484 | 569 | - | - | |
Sed10g1115 | 870 | MobiDBLite | consensus disorder prediction | 272 | 340 | - | - | |
Sed10g1115 | 870 | CDD | STKc_phototropin_like | 484 | 840 | - | - | |
Sed10g1115 | 870 | Gene3D | Transferase(Phosphotransferase) domain 1 | 566 | 634 | - | - | |
Sed10g1115 | 870 | FunFam | serine/threonine-protein kinase D6PK-like | 714 | 837 | - | - | |
Sed10g1115 | 870 | SMART | serkin_6 | 486 | 819 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed10g1115 | 870 | Gene3D | Transferase(Phosphotransferase) domain 1 | 712 | 837 | - | - | |
Sed10g1115 | 870 | MobiDBLite | consensus disorder prediction | 422 | 461 | - | - | |
Sed10g1115 | 870 | Gene3D | Phosphorylase Kinase; domain 1 | 484 | 565 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1115 | Sed-Chr10:12766537 | Sed14g0325 | Sed-Chr14:3333838 | 0.00E+00 | dispersed | |
Sed10g1114 | Sed-Chr10:12766537 | Sed10g1115 | Sed-Chr10:12766537 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79848 | PF00069 | Pkinase | 4.00E-35 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1115 | - | - | - | 0.0 |