Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1115 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAAAGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGATCTCGTCATTCAGATTTTTTATCAGACAAAGATCGGAAACTTTCTGCATTGAAATTTGGTTTCAAGGGATCTCTAGAGGATGATATCAATCATCTTTTTGAGTCTATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCACAAGTAGAGGTAAACTCACTGAGAAAAAGTACACTAAAGAAGCCGATAGCTGTTGGCATGCCTCGCTCACCAGGTATTGGTACTTCTGAGTCTAGTAGTCTGAAGCAAGCCCTCAGGGAACTATCCCTTTCAAAGGCATCTGAAATGGCTTCTATGAAAAGATCATCAAAATTAGCTAGCTCTTCAAGGCTCTCGGAAGCTGGGCGGATCAAGACATTGTACAATTCAGTTATGGTTGAGGCTACCGAGTCTTGCTCTTCTTCAGATTATGGTAAGGGAGGGCGTGTGGTTCAAATATCCCTAGTTCCAGAGGAAGAAAAGTTGAACTCTGAAAAGAGACTTGAGCATGTCCAGGCATCTACTGTTAAGTCACCGGCTAAAAATGCTCAATCTTCTCATCGGTTACTAGTTGCAAAAGCACAAAGTTCTGTTGATGTTGTTACAATGGGACAAAAAGTCAATACCACTTTGTCAAGGAAAGTTGGATCTCAGACATTAAAGGCAGAGCTAGAGAAGGAAGAGGAGTCCATTACTCCTCCATCCTTATCGGCTTGCACCATTGGCAAGGTTCTAGAGAAGAAGAAGAAGAAAATTCTTGCCTCAAGCAGGGTAGCAGATAAAGCATCAGCATCTAACGTAGGACGAAAAGGTAGGTTGCAAACTGCATCATCATCTAAGTTGGGTAGTGGCAATAAGGTAGGCAAGTTATCTAGAAGTAACTCCCGTTCTGTTAAACCAGTTATTAGGAACAAGGGGCTGGCAAAGAAAAAAGTCAAACAGGATTCGAGTTCTCCAACATGTAGTGCAAGCACATACAATGCAGTCAATAGTGATATCCATCCTAATAAAAAGAAGTTGATATGTGAGAGGTGCCATTGCGCATTGAATAGTGCAGCTACAGACTCAAAGAAGGAATCTGCATCCCAGTTTAGTGGCCTTGTTTCTGACGTAAACATAGCTAGTACAAAATCTGGCTTTAACAAATCAGGCATCAAAGCGGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACCAAGGTACAAGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAATGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGTGCATGGTGGATCCAGTAATGGTAACAGACCTCATATGTCGAAAGATGTAAAGTGGGAAGCCATACGCCATGGACAATTGCAGCATGGGGCCCTCAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAGTTGCCTATTTGCCATTAAGGTCATGGACAATGAGTTTCTTGCAAGACGGAAGAAAATGCCTAGAGCGCAAACTGAGAGTGAAATTCTGAGAATGCTAGATCATCCATTCCTTCCAACACTTTTTGTTCAATTTACTTCAGATAATCTATCATGTCTTGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGACCGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGCCACATAATGCTTACCGACTTTGACCTGTCGCTTCGGTGCACGGTCAGTCCGACACTCCTAAAATTGTCATCTTTCAATGCAGACTTGGTGAGAACATCAGGTCCGTGTACAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCACCATGTCAAGTACCATGCTTCAGCCCAAGGTTCTTACCTGCTGCTTCCAGAACAAGGAAGTCAAAACCTGACCTCATAACGCAGTTGAGGTCATTGCCCCAGCTCGTTGCTGAACCCACTGATGCACGATCGAATTCTTTTGTAGGCACTCACGAATACTTGGCTCCCGAGATCATTAAAGGAGAGGGTCATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTCTATGAACTTCTGTATGGTAGCACCCCTTTCAAAGGTTCCAATAATGAAGAAACATTAGCCAATGTAGTATTGCAGAGCCTCAGCTTTCCCGACACCCCAATGGTTAGTTTCCAAGCAAGGGACCTTATCCGAGGGCTGTTGGTAAAAGAACCCGGAAATCGATTTGGGACCGATAAAGGGGCTGCAGCGATTAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGCTGTGCAATTCCTCCCGAACTTCCGGACTCGAGCGATATGGACATTCCAAGCATGATTTCTCAACAAAACAATTTCAGGTATTTGGAAAGCAAATCCAATGGAGAGCACTTGGAGTTCGAATTGTTTTAG 2613 43.02 MGSGTCEIVEAKEEIKPVQSKVGSRHSDFLSDKDRKLSALKFGFKGSLEDDINHLFESISIKNASKSLGHSQVEVNSLRKSTLKKPIAVGMPRSPGIGTSESSSLKQALRELSLSKASEMASMKRSSKLASSSRLSEAGRIKTLYNSVMVEATESCSSSDYGKGGRVVQISLVPEEEKLNSEKRLEHVQASTVKSPAKNAQSSHRLLVAKAQSSVDVVTMGQKVNTTLSRKVGSQTLKAELEKEEESITPPSLSACTIGKVLEKKKKKILASSRVADKASASNVGRKGRLQTASSSKLGSGNKVGKLSRSNSRSVKPVIRNKGLAKKKVKQDSSSPTCSASTYNAVNSDIHPNKKKLICERCHCALNSAATDSKKESASQFSGLVSDVNIASTKSGFNKSGIKADGKASDVRVKRNTKVQDKGEFSQSSKSSQCEYSSSTTSIISDDSNVHGGSSNGNRPHMSKDVKWEAIRHGQLQHGALSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTESEILRMLDHPFLPTLFVQFTSDNLSCLVMEYCPGGDLHVLRQKQLDRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKLSSFNADLVRTSGPCTDSSCAEPFCIEPPCQVPCFSPRFLPAASRTRKSKPDLITQLRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGSTPFKGSNNEETLANVVLQSLSFPDTPMVSFQARDLIRGLLVKEPGNRFGTDKGAAAIKQHPFFEGLNWALIRCAIPPELPDSSDMDIPSMISQQNNFRYLESKSNGEHLEFELF 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12766537 12771856 - Sed0001335.2 Sed10g1115 727619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1115 870 PANTHER FLIPPASE KINASE 1-RELATED 312 848 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed10g1115 870 MobiDBLite consensus disorder prediction 399 462 - -
Sed10g1115 870 MobiDBLite consensus disorder prediction 285 317 - -
Sed10g1115 870 SUPERFAMILY Protein kinase-like (PK-like) 464 837 IPR011009 -
Sed10g1115 870 MobiDBLite consensus disorder prediction 405 421 - -
Sed10g1115 870 FunFam serine/threonine-protein kinase D6PK-like 570 637 - -
Sed10g1115 870 ProSiteProfiles Protein kinase domain profile. 486 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1115 870 Pfam Protein kinase domain 716 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1115 870 Pfam Protein kinase domain 487 637 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1115 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed10g1115 870 FunFam Serine/threonine-protein kinase D6PK-like 484 569 - -
Sed10g1115 870 MobiDBLite consensus disorder prediction 272 340 - -
Sed10g1115 870 CDD STKc_phototropin_like 484 840 - -
Sed10g1115 870 Gene3D Transferase(Phosphotransferase) domain 1 566 634 - -
Sed10g1115 870 FunFam serine/threonine-protein kinase D6PK-like 714 837 - -
Sed10g1115 870 SMART serkin_6 486 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed10g1115 870 Gene3D Transferase(Phosphotransferase) domain 1 712 837 - -
Sed10g1115 870 MobiDBLite consensus disorder prediction 422 461 - -
Sed10g1115 870 Gene3D Phosphorylase Kinase; domain 1 484 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1115 Sed-Chr10:12766537 Sed14g0325 Sed-Chr14:3333838 0.00E+00 dispersed
Sed10g1114 Sed-Chr10:12766537 Sed10g1115 Sed-Chr10:12766537 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79848 PF00069 Pkinase 4.00E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1115 - - - 0.0