Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1151 ATGAAGTCGATGAGTGAGAACGAGAATGAGAATAACAGTAACAACGGTTGGTTGGGGTTCTCTCTCTGTCCCCAAATGAAAATGGAGGTTTCATCTTGTGATCATCCAAATGGGTTCTATTACAGCAACAACGCCCACAGCAACAGCGCATCCGAACTGTTGTATGGCATTCCCGAGTCTTCCCTCTCTGTCATGCCCCTCAAATCCGACGGCTCTCTCTGTATCATGGAAGCCCTTTCAAGATCCCAACCCGAGGGAGGGATGGTCCCGAGCTCGTCGCCGAAGCTAGAGGACTTTCTGGGTGGTCGAGGCTACTTCAGCACAAATCACAATGTGGAAACCGAACCCCACAGGGAGCATTCATTGGAGCTTCTTCATCGCCCCTATAGACAGAGTGAAGATGAGCATCAGCAACAGATGTTCATTCCTAATTCCCAATACAACTTTTACTATGCCAATGGAATGGGAATGGGAATGGGAATGGATCCCCAAATGCTTCCCTGGGTGTCTCGTTCGCATAACACTCTGGAGCTGCACCATCTTAGCAATGACCAGGCTCCTGCTTCGGTTCCCTCAGCCCAGAACTTGCAGTCGTTGAGCTTGTCGATGAGTCCGGGTTCCCAATCCAGCTCCTTCCCTGCTTCCCCTTCCGCCCCGGCCCTCCTCGAAACCAAGAAAAGAGGTTCCGGGAAACTCTCCCACAAAAATCCCCCCGTTCACCGCAAGTCGATTGATACTTTCGGCCAAAGAACCTCCCAATATCGTGGCGTTACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTCTGGGATAATAGTTGCAAGAAAGAAGGCCAAACTAGGAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCACGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACACATATCAATTTTCCATTGGAGAATTACCAGACTGAACTGGATGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCCAGGGGCGCATCAATATATCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAGGCTAGGATTGGTAGAGTTGCCGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTTCGTGGTGTAAATGCAGTCACCAACTTTGACATTTCCAAATATGATGTCGAGAGAATCATGGCTAGTAGTACCCTACTTGCAGGCGAGCATGCCCGGAGGAACAAGGATGTCGAACCGAGCAGCAATGCCATTGTCGCGTATGATTCTTCCCCCATCCCAAACAACAATGGCGGGATCGGGATTGGAATCGAGATGGATCCCGACAACAATGTCACCAATGAGAATGGCACTGATTGGAAGATGGCACTGTATCAAAATTCGTCACATCAGCAACATCAACAAGAAGCAGCAGCTGCTGGTGCGTGTGTAGTGGAATCACTGAACCATCATCACAACAAGTCCATTGCGGCATCGGGAGGCTATCGTAATGCCTCATTTTCAATGGCATTGCACGATTTGGTTGGGATCGAGTCGTTGAACACAAACAGTCATGGCATTGAAGACGATGTGAGCAAACAAGTGACTCATTTTTCTAATTCGTCGTCCCTGGTTACAAGTTTGAGTAGCTCAAGAGAAGGCAGTCCGGACAAGTCAAACGCATCGATGCCGTTTGCAAGGTCCTCGCCCCTGATGGCATCCAAGCTAATTGGTGCACCAAACAGTGCTGGGTCGTGGTATCCAACCCCACAGCAGCTGAGGCCAACAGCCATATCCATGGGACATTTGCCTGTTTTTGCAACTTGGAATGAGACTTAA 1905 48.82 MKSMSENENENNSNNGWLGFSLCPQMKMEVSSCDHPNGFYYSNNAHSNSASELLYGIPESSLSVMPLKSDGSLCIMEALSRSQPEGGMVPSSSPKLEDFLGGRGYFSTNHNVETEPHREHSLELLHRPYRQSEDEHQQQMFIPNSQYNFYYANGMGMGMGMDPQMLPWVSRSHNTLELHHLSNDQAPASVPSAQNLQSLSLSMSPGSQSSSFPASPSAPALLETKKRGSGKLSHKNPPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELDEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISKYDVERIMASSTLLAGEHARRNKDVEPSSNAIVAYDSSPIPNNNGGIGIGIEMDPDNNVTNENGTDWKMALYQNSSHQQHQQEAAAAGACVVESLNHHHNKSIAASGGYRNASFSMALHDLVGIESLNTNSHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKSNASMPFARSSPLMASKLIGAPNSAGSWYPTPQQLRPTAISMGHLPVFATWNET 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16090429 16093877 + Sed0011253.1 Sed10g1151 727655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1151 634 SUPERFAMILY DNA-binding domain 252 321 IPR016177 GO:0003677(InterPro)
Sed10g1151 634 ProSiteProfiles AP2/ERF domain profile. 355 413 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 MobiDBLite consensus disorder prediction 200 219 - -
Sed10g1151 634 ProSiteProfiles AP2/ERF domain profile. 253 319 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 CDD AP2 252 319 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 CDD AP2 354 415 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 Gene3D AP2/ERF domain 252 321 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 Gene3D AP2/ERF domain 355 415 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 FunFam AP2-like ethylene-responsive transcription factor ANT 252 321 - -
Sed10g1151 634 SMART rav1_2 253 325 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 SMART rav1_2 355 419 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 SUPERFAMILY DNA-binding domain 354 415 IPR016177 GO:0003677(InterPro)
Sed10g1151 634 MobiDBLite consensus disorder prediction 568 587 - -
Sed10g1151 634 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 PRINTS Ethylene responsive element binding protein signature 395 415 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 Pfam AP2 domain 356 405 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 Pfam AP2 domain 253 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1151 634 MobiDBLite consensus disorder prediction 200 217 - -
Sed10g1151 634 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 189 489 - -
Sed10g1151 634 FunFam AP2-like ethylene-responsive transcription factor 354 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2260 Sed-Chr6:46176610 Sed10g1151 Sed-Chr10:16090429 3.30E-107 dispersed
Sed09g1410 Sed-Chr9:37972345 Sed10g1151 Sed-Chr10:16090429 8.00E-70 dispersed
Sed10g0753 Sed-Chr10:5206626 Sed10g1151 Sed-Chr10:16090429 1.50E-137 dispersed
Sed10g1151 Sed-Chr10:16090429 Sed14g0948 Sed-Chr14:18604434 1.40E-131 dispersed
Sed10g1151 Sed-Chr10:16090429 Sed10g1152 Sed-Chr10:16090429 3.70E-302 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39775 PF00847 AP2 1.40E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1151 K09285 - csv:101212797 811.986