Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed10g1151 | ATGAAGTCGATGAGTGAGAACGAGAATGAGAATAACAGTAACAACGGTTGGTTGGGGTTCTCTCTCTGTCCCCAAATGAAAATGGAGGTTTCATCTTGTGATCATCCAAATGGGTTCTATTACAGCAACAACGCCCACAGCAACAGCGCATCCGAACTGTTGTATGGCATTCCCGAGTCTTCCCTCTCTGTCATGCCCCTCAAATCCGACGGCTCTCTCTGTATCATGGAAGCCCTTTCAAGATCCCAACCCGAGGGAGGGATGGTCCCGAGCTCGTCGCCGAAGCTAGAGGACTTTCTGGGTGGTCGAGGCTACTTCAGCACAAATCACAATGTGGAAACCGAACCCCACAGGGAGCATTCATTGGAGCTTCTTCATCGCCCCTATAGACAGAGTGAAGATGAGCATCAGCAACAGATGTTCATTCCTAATTCCCAATACAACTTTTACTATGCCAATGGAATGGGAATGGGAATGGGAATGGATCCCCAAATGCTTCCCTGGGTGTCTCGTTCGCATAACACTCTGGAGCTGCACCATCTTAGCAATGACCAGGCTCCTGCTTCGGTTCCCTCAGCCCAGAACTTGCAGTCGTTGAGCTTGTCGATGAGTCCGGGTTCCCAATCCAGCTCCTTCCCTGCTTCCCCTTCCGCCCCGGCCCTCCTCGAAACCAAGAAAAGAGGTTCCGGGAAACTCTCCCACAAAAATCCCCCCGTTCACCGCAAGTCGATTGATACTTTCGGCCAAAGAACCTCCCAATATCGTGGCGTTACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTCTGGGATAATAGTTGCAAGAAAGAAGGCCAAACTAGGAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCACGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACACATATCAATTTTCCATTGGAGAATTACCAGACTGAACTGGATGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCCAGGGGCGCATCAATATATCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAGGCTAGGATTGGTAGAGTTGCCGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTTCGTGGTGTAAATGCAGTCACCAACTTTGACATTTCCAAATATGATGTCGAGAGAATCATGGCTAGTAGTACCCTACTTGCAGGCGAGCATGCCCGGAGGAACAAGGATGTCGAACCGAGCAGCAATGCCATTGTCGCGTATGATTCTTCCCCCATCCCAAACAACAATGGCGGGATCGGGATTGGAATCGAGATGGATCCCGACAACAATGTCACCAATGAGAATGGCACTGATTGGAAGATGGCACTGTATCAAAATTCGTCACATCAGCAACATCAACAAGAAGCAGCAGCTGCTGGTGCGTGTGTAGTGGAATCACTGAACCATCATCACAACAAGTCCATTGCGGCATCGGGAGGCTATCGTAATGCCTCATTTTCAATGGCATTGCACGATTTGGTTGGGATCGAGTCGTTGAACACAAACAGTCATGGCATTGAAGACGATGTGAGCAAACAAGTGACTCATTTTTCTAATTCGTCGTCCCTGGTTACAAGTTTGAGTAGCTCAAGAGAAGGCAGTCCGGACAAGTCAAACGCATCGATGCCGTTTGCAAGGTCCTCGCCCCTGATGGCATCCAAGCTAATTGGTGCACCAAACAGTGCTGGGTCGTGGTATCCAACCCCACAGCAGCTGAGGCCAACAGCCATATCCATGGGACATTTGCCTGTTTTTGCAACTTGGAATGAGACTTAA | 1905 | 48.82 | MKSMSENENENNSNNGWLGFSLCPQMKMEVSSCDHPNGFYYSNNAHSNSASELLYGIPESSLSVMPLKSDGSLCIMEALSRSQPEGGMVPSSSPKLEDFLGGRGYFSTNHNVETEPHREHSLELLHRPYRQSEDEHQQQMFIPNSQYNFYYANGMGMGMGMDPQMLPWVSRSHNTLELHHLSNDQAPASVPSAQNLQSLSLSMSPGSQSSSFPASPSAPALLETKKRGSGKLSHKNPPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELDEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISKYDVERIMASSTLLAGEHARRNKDVEPSSNAIVAYDSSPIPNNNGGIGIGIEMDPDNNVTNENGTDWKMALYQNSSHQQHQQEAAAAGACVVESLNHHHNKSIAASGGYRNASFSMALHDLVGIESLNTNSHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKSNASMPFARSSPLMASKLIGAPNSAGSWYPTPQQLRPTAISMGHLPVFATWNET | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 16090429 | 16093877 | + | Sed0011253.1 | Sed10g1151 | 727655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed10g1151 | 634 | SUPERFAMILY | DNA-binding domain | 252 | 321 | IPR016177 | GO:0003677(InterPro) | |
Sed10g1151 | 634 | ProSiteProfiles | AP2/ERF domain profile. | 355 | 413 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | MobiDBLite | consensus disorder prediction | 200 | 219 | - | - | |
Sed10g1151 | 634 | ProSiteProfiles | AP2/ERF domain profile. | 253 | 319 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | CDD | AP2 | 252 | 319 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | CDD | AP2 | 354 | 415 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | Gene3D | AP2/ERF domain | 252 | 321 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | Gene3D | AP2/ERF domain | 355 | 415 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 252 | 321 | - | - | |
Sed10g1151 | 634 | SMART | rav1_2 | 253 | 325 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | SMART | rav1_2 | 355 | 419 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | SUPERFAMILY | DNA-binding domain | 354 | 415 | IPR016177 | GO:0003677(InterPro) | |
Sed10g1151 | 634 | MobiDBLite | consensus disorder prediction | 568 | 587 | - | - | |
Sed10g1151 | 634 | PRINTS | Ethylene responsive element binding protein signature | 254 | 265 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | PRINTS | Ethylene responsive element binding protein signature | 395 | 415 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | Pfam | AP2 domain | 356 | 405 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | Pfam | AP2 domain | 253 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed10g1151 | 634 | MobiDBLite | consensus disorder prediction | 200 | 217 | - | - | |
Sed10g1151 | 634 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 189 | 489 | - | - | |
Sed10g1151 | 634 | FunFam | AP2-like ethylene-responsive transcription factor | 354 | 415 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2260 | Sed-Chr6:46176610 | Sed10g1151 | Sed-Chr10:16090429 | 3.30E-107 | dispersed | |
Sed09g1410 | Sed-Chr9:37972345 | Sed10g1151 | Sed-Chr10:16090429 | 8.00E-70 | dispersed | |
Sed10g0753 | Sed-Chr10:5206626 | Sed10g1151 | Sed-Chr10:16090429 | 1.50E-137 | dispersed | |
Sed10g1151 | Sed-Chr10:16090429 | Sed14g0948 | Sed-Chr14:18604434 | 1.40E-131 | dispersed | |
Sed10g1151 | Sed-Chr10:16090429 | Sed10g1152 | Sed-Chr10:16090429 | 3.70E-302 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39775 | PF00847 | AP2 | 1.40E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed10g1151 | K09285 | - | csv:101212797 | 811.986 |