Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1152 ATGTTTTCCATTTTGGAAGGGATGGTCCCGAGCTCGTCGCCGAAGCTAGAGGACTTTCTGGGTGGTCGAGGCTACTTCAGCACAAATCACAATGTGGAAACCGAACCCCACAGGGAGCATTCATTGGAGCTTCTTCATCGCCCCTATAGACAGAGTGAAGATGAGCATCAGCAACAGATGTTCATTCCTAATTCCCAATACAACTTTTACTATGCCAATGGAATGGGAATGGGAATGGGAATGGATCCCCAAATGCTTCCCTGGGTGTCTCGTTCGCATAACACTCTGGAGCTGCACCATCTTAGCAATGACCAGGCTCCTGCTTCGGTTCCCTCAGCCCAGAACTTGCAGTCGTTGAGCTTGTCGATGAGTCCGGGTTCCCAATCCAGCTCCTTCCCTGCTTCCCCTTCCGCCCCGGCCCTCCTCGAAACCAAGAAAAGAGGTTCCGGGAAACTCTCCCACAAAAATCCCCCCGTTCACCGCAAGTCGATTGATACTTTCGGCCAAAGAACCTCCCAATATCGTGGCGTTACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTCTGGGATAATAGTTGCAAGAAAGAAGGCCAAACTAGGAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCACGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACACATATCAATTTTCCATTGGAGAATTACCAGACTGAACTGGATGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCCAGGGGCGCATCAATATATCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAGGCTAGGATTGGTAGAGTTGCCGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTTCGTGGTGTAAATGCAGTCACCAACTTTGACATTTCCAAATATGATGTCGAGAGAATCATGGCTAGTAGTACCCTACTTGCAGGCGAGCATGCCCGGAGGAACAAGGATGTCGAACCGAGCAGCAATGCCATTGTCGCGTATGATTCTTCCCCCATCCCAAACAACAATGGCGGGATCGGGATTGGAATCGAGATGGATCCCGACAACAATGTCACCAATGAGAATGGCACTGATTGGAAGATGGCACTGTATCAAAATTCGTCACATCAGCAACATCAACAAGAAGCAGCAGCTGCTGGTGCGTGTGTAGTGGAATCACTGAACCATCATCACAACAAGTCCATTGCGGCATCGGGAGGCTATCGTAATGCCTCATTTTCAATGGCATTGCACGATTTGGTTGGGATCGAGTCGTTGAACACAAACAGTCATGGCATTGAAGACGATGTGAGCAAACAAGTGACTCATTTTTCTAATTCGTCGTCCCTGGTTACAAGTTTGAGTAGCTCAAGAGAAGGCAGTCCGGACAAGTCAAACGCATCGATGCCGTTTGCAAGGTCCTCGCCCCTGATGGCATCCAAGCTAATTGGTGCACCAAACAGTGCTGGGTCGTGGTATCCAACCCCACAGCAGCTGAGGCCAACAGCCATATCCATGGGACATTTGCCTGTTTTTGCAACTTGGAATGAGACTTAA 1665 48.65 MFSILEGMVPSSSPKLEDFLGGRGYFSTNHNVETEPHREHSLELLHRPYRQSEDEHQQQMFIPNSQYNFYYANGMGMGMGMDPQMLPWVSRSHNTLELHHLSNDQAPASVPSAQNLQSLSLSMSPGSQSSSFPASPSAPALLETKKRGSGKLSHKNPPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELDEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISKYDVERIMASSTLLAGEHARRNKDVEPSSNAIVAYDSSPIPNNNGGIGIGIEMDPDNNVTNENGTDWKMALYQNSSHQQHQQEAAAAGACVVESLNHHHNKSIAASGGYRNASFSMALHDLVGIESLNTNSHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKSNASMPFARSSPLMASKLIGAPNSAGSWYPTPQQLRPTAISMGHLPVFATWNET 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16090429 16093877 + Sed0011253.2 Sed10g1152 727656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1152 554 Gene3D AP2/ERF domain 275 335 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 Gene3D AP2/ERF domain 172 241 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 MobiDBLite consensus disorder prediction 120 139 - -
Sed10g1152 554 ProSiteProfiles AP2/ERF domain profile. 173 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 PRINTS Ethylene responsive element binding protein signature 315 335 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 CDD AP2 172 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 Pfam AP2 domain 173 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 Pfam AP2 domain 276 325 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 CDD AP2 274 335 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 SUPERFAMILY DNA-binding domain 274 335 IPR016177 GO:0003677(InterPro)
Sed10g1152 554 SMART rav1_2 275 339 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 SMART rav1_2 173 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed10g1152 554 MobiDBLite consensus disorder prediction 488 507 - -
Sed10g1152 554 FunFam AP2-like ethylene-responsive transcription factor 274 335 - -
Sed10g1152 554 SUPERFAMILY DNA-binding domain 172 241 IPR016177 GO:0003677(InterPro)
Sed10g1152 554 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 409 - -
Sed10g1152 554 FunFam AP2-like ethylene-responsive transcription factor ANT 172 241 - -
Sed10g1152 554 MobiDBLite consensus disorder prediction 120 137 - -
Sed10g1152 554 ProSiteProfiles AP2/ERF domain profile. 275 333 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1152 Sed-Chr10:16090429 Sed14g0948 Sed-Chr14:18604434 2.40E-124 dispersed
Sed10g1151 Sed-Chr10:16090429 Sed10g1152 Sed-Chr10:16090429 3.70E-302 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39776 PF00847 AP2 1.20E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1152 K09285 - csv:101212797 729.939