Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed10g1165 | ATGGAGGACGCCTTTGCCAGATCTATCTCTGAGGTCCTGGATTTTTTTGGGGTTGACCCATCACAAGGTCTCACGAACGATCAGGTTTTGCATCATGCTAAAATTTATGGGAAAAACGTGCTACCCGAGGAGAAAAGGGCACCATTTTGGAAATTGGTTTTGAAGCAGTTCGATGATTTACTAGTGAAAATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTAGGCGTGATTACGGAAACAAATGCTGAAAAAGCTCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTAATGAGAAATGGTTCCTTTTCAATACTTCCGGCCACTGAGCTTGTTCCCGGTGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTAAGTAATCAGCTGCGTGTTGATCAAGCCATTCTCACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTTGAGTCCACAAGGGCAGTAAAAGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGCACAGTGGTGGTTGCTGGCAGGGCTCGTGCTGTTGTGGTAGGAGTTGGTGCTAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACGCCATTGAAAAAGAAGCTAGATGAATTTGGTACTTTTCTAGCCAAGGTTATTGCTGGAATTTGTGCACTCGTATGGATAGTAAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGGTTGTAAGTGGTGCAATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCGGCCATTCCCGAAGGACTTCCTGCCGTTGTCACTACGTGTTTGGCTCTTGGCACCAAAAGAATGGCACGTCTGAATGCGATTGTGAGGTCTTTGCCATCTGTTGAAACTCTAGGTTGCACTACTGTTATATGTAGTGACAAGACAGGAACTTTGACTACCAATATGATGTCCGTCTCAAAGATTTGTGTTGTCCATTCTGTTTTGCATGGTCCACAAATTTCTGAGTACAGTGTCAGCGGTTCAACATATGCTCCTGATGGTATTATTTTTGACAACACTGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACACCTGGCAATGGGCTCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGGAGCTACGAAAAAATTGGTGAATCGACTGAAGTAGCACTGCGTGTATTTGCTGAAAAGGTTGGTCTTCCTGGTTTTGATTCTATGCCGTTTTCTCTGAATATGCTAAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGTCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGTGATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGTATTATTTCAAGATGCTCAAGTATCCTTTGCAATGAAGATGGTTCCACCAATGTTTTAACTTCTAGTATTCGTACTGAACTGGAAGAAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATTGCATTCAAATTTCTGCCAGTGAGCCAGCAGAGTTTATCCTTTGATGATGAGCGAGACTTAACTTTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGGGAGGAAGTGAGAAATGCTATGCTATCATGCATGACTGCGGGCATACGTGTTATAGTTGTAACTGGGGACAGCAAGTCAACTGCTGAATCACTATGCCGTAAAATTGGTGCTTTTGATCACTTGGTAGATCTAACTGGCCATTCTCTTACTGCTACTGAATTTGAAGAACTACCTGCAATGCAACAAACAATGGCATTGCAGCGAATGGCACTCTTCACCAGGGTTGAACCTTCTCATAAGAGAATGCTTGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACTGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATTGGAATTGCCATGGGTTCAGGAACAGCGGTCGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAACAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTCGTGGCAGCTGTTCTTGGAATACCAGAGACTCTTGCCCCCGTACAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAATAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGTGAATGAAGCGGTCGTGACCGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGCTTATGTTGGTCTTGCAACAGTTGCTGGCTTTATATGGTGGTTTGTTTACTCGGACAACGGTCCTAAACTAACTTACACTGAGTTGATGAATTTTGATACTTGTTCAGAAAGAGAGACACCATACCCTTGCAGTATCTTTGAGGATCGGCATCCGTCTACTGTGTCTATGACTGTACTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTTAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAACTTATGGCTAGTTGCCTCCATTATCTTAACCATGATCCTTCACATGCTTATTATGTATGTGCGACCACTAGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGACTGAATGGACGATGGTTTTGTATCTTTCGTTTCCTGTTATAATTATTGATGAGGTTCTCAAGTTCTTTTCACGACGCACCAGTGGCAGATTGAGGCTTCCATTTAGATTGAGAAGGCACGACTTACTTCCAAAGCAGGAATTGCATGACAAATAA | 3009 | 42.41 | MEDAFARSISEVLDFFGVDPSQGLTNDQVLHHAKIYGKNVLPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGSFSILPATELVPGDIVEVAVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELESTRAVKAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVVSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQISEYSVSGSTYAPDGIIFDNTGVQLEFPAQLPCILHLAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFDSMPFSLNMLSKHERASYCNHHWESQFKKISVLEFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTNVLTSSIRTELEERFQSFAGNEMLRCLAIAFKFLPVSQQSLSFDDERDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDSKSTAESLCRKIGAFDHLVDLTGHSLTATEFEELPAMQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDNGPKLTYTELMNFDTCSERETPYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIILTMILHMLIMYVRPLAVLFSVTPLSWTEWTMVLYLSFPVIIIDEVLKFFSRRTSGRLRLPFRLRRHDLLPKQELHDK | 1002 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 18623604 | 18706720 | - | Sed0025438.1 | Sed10g1165 | 727669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed10g1165 | 1002 | CDD | P-type_ATPase_SERCA | 5 | 976 | - | - | |
| Sed10g1165 | 1002 | Gene3D | - | 355 | 592 | IPR023299 | GO:0000166(InterPro) | |
| Sed10g1165 | 1002 | FunFam | Calcium-transporting ATPase | 355 | 592 | - | - | |
| Sed10g1165 | 1002 | Pfam | Cation transporting ATPase, C-terminus | 775 | 974 | IPR006068 | - | |
| Sed10g1165 | 1002 | Gene3D | - | 22 | 237 | - | - | |
| Sed10g1165 | 1002 | SFLD | p-type atpase | 326 | 743 | IPR044492 | - | |
| Sed10g1165 | 1002 | FunFam | Calcium-transporting ATPase | 112 | 237 | - | - | |
| Sed10g1165 | 1002 | NCBIfam | calcium-translocating P-type ATPase, SERCA-type | 53 | 846 | IPR005782 | GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro) | |
| Sed10g1165 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 585 | 596 | - | - | |
| Sed10g1165 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 173 | 187 | - | - | |
| Sed10g1165 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 691 | 710 | - | - | |
| Sed10g1165 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 714 | 726 | - | - | |
| Sed10g1165 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 607 | 617 | - | - | |
| Sed10g1165 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 345 | 359 | - | - | |
| Sed10g1165 | 1002 | SUPERFAMILY | HAD-like | 578 | 739 | IPR036412 | - | |
| Sed10g1165 | 1002 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 686 | 979 | - | - | |
| Sed10g1165 | 1002 | SMART | Cation_ATPase_N_a_2 | 3 | 77 | IPR004014 | - | |
| Sed10g1165 | 1002 | Pfam | E1-E2 ATPase | 122 | 324 | - | - | |
| Sed10g1165 | 1002 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 2 | 978 | IPR023298 | - | |
| Sed10g1165 | 1002 | FunFam | Calcium-transporting ATPase, putative | 210 | 341 | - | - | |
| Sed10g1165 | 1002 | Gene3D | - | 342 | 735 | IPR023214 | - | |
| Sed10g1165 | 1002 | Pfam | haloacid dehalogenase-like hydrolase | 582 | 705 | - | - | |
| Sed10g1165 | 1002 | SFLD | C1.7: P-type atpase like | 326 | 743 | - | - | |
| Sed10g1165 | 1002 | SUPERFAMILY | Calcium ATPase, transduction domain A | 124 | 235 | IPR008250 | - | |
| Sed10g1165 | 1002 | FunFam | Sodium/potassium-transporting ATPase subunit alpha | 585 | 730 | - | - | |
| Sed10g1165 | 1002 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 8 | 979 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| Sed10g1165 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 661 | 779 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed10g1165 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 92 | 367 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed10g1165 | 1002 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 352 | 589 | IPR023299 | GO:0000166(InterPro) | |
| Sed10g1165 | 1002 | Pfam | Cation transporter/ATPase, N-terminus | 7 | 72 | IPR004014 | - | |
| Sed10g1165 | 1002 | Pfam | Cation transport ATPase (P-type) | 415 | 524 | - | - | |
| Sed10g1165 | 1002 | Gene3D | - | 55 | 976 | - | - | |
| Sed10g1165 | 1002 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 347 | 353 | IPR018303 | - | |
| Sed10g1165 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 663 | 679 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed10g1165 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 691 | 707 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed10g1165 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 722 | 747 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed10g1165 | Sed-Chr10:18623604 | Sed11g0591 | Sed-Chr11:6913248 | 5.10E-80 | dispersed | |
| Sed10g1165 | Sed-Chr10:18623604 | Sed13g1363 | Sed-Chr13:19121131 | 3.00E-226 | transposed | |
| Sed10g1165 | Sed-Chr10:18623604 | Sed01g1059 | Sed-Chr1:7912554 | 3.00E-226 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed10g1165 | K05853 | - | csv:101211345 | 1846.25 |