Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1170 ATGGCATTTACAGGCACTACCCAGAAATGTATGGCTTGTGAAAAAACCGTCTATCTCGTTGACAAGTTGACCGCCGATAACCGTATCTATCACAAGGCCTGTTTCAGATGTCACCACTGCAAAGGGACTCTCAAGCTCAGCAACTACAATTCCTTTGAGGGGGTCCTTTACTGCAGGCCACACTTTGATCAGACCTTTAAGAGGACTGGTAGTCTTGACAAAAGCTTTGAAGGTACGCCCAAGATCGTAAAACCAGAGAAACTGATTGATAGTGAGAAACCGGCAGCAAACAAGGTTGCTAACAGATTCGGGGGAACCAGAGATAAATGTCTCGGCTGTAATAATACTGTCTATCCGACAGAAAAGGTTACTGTGAATGGAACTCCATACCATAAAAGTTGCTTCAAATGCTGCCATGGAGGATGCACGATCAGCCCTTCGAACTATATCGCTCACGAGGGACGACTTTACTGCAAGCACCACTATATCCAACTGATCAAGGAGAAGGGAAACTTGAGTCAGCTTGAGGGTGACCATGAAAAGGTAACTGCAAAGGAGAAAACCAATGGCGGAGAGGTGGCTTCTGAAGCCTCCTGA 597 46.06 MAFTGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQTFKRTGSLDKSFEGTPKIVKPEKLIDSEKPAANKVANRFGGTRDKCLGCNNTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHYIQLIKEKGNLSQLEGDHEKVTAKEKTNGGEVASEAS 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19044097 19045020 - Sed0003112.1 Sed10g1170 727674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1170 198 Pfam LIM domain 110 164 IPR001781 -
Sed10g1170 198 Pfam LIM domain 10 65 IPR001781 -
Sed10g1170 198 CDD LIM1_SF3 6 68 - -
Sed10g1170 198 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Sed10g1170 198 SMART lim_4 9 61 IPR001781 -
Sed10g1170 198 SMART lim_4 109 161 IPR001781 -
Sed10g1170 198 FunFam LIM domain and actin-binding 1 4 74 - -
Sed10g1170 198 CDD LIM2_SF3 110 170 - -
Sed10g1170 198 MobiDBLite consensus disorder prediction 175 198 - -
Sed10g1170 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 135 - -
Sed10g1170 198 Gene3D Cysteine Rich Protein 4 74 - -
Sed10g1170 198 Gene3D Cysteine Rich Protein 105 174 - -
Sed10g1170 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Sed10g1170 198 PANTHER OS06G0237300 PROTEIN 2 186 - GO:0005886(PANTHER)|GO:0015629(PANTHER)|GO:0051015(PANTHER)|GO:0051017(PANTHER)
Sed10g1170 198 FunFam LIM domain and actin-binding 1 104 174 - -
Sed10g1170 198 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Sed10g1170 198 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Sed10g1170 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Sed10g1170 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1170 K09377 - - csv:101210188 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2723 Sed-Chr1:21848418 Sed10g1170 Sed-Chr10:19044097 6.90E-97 dispersed
Sed08g0154 Sed-Chr8:873819 Sed10g1170 Sed-Chr10:19044097 3.10E-71 dispersed
Sed10g1170 Sed-Chr10:19044097 Sed10g1951 Sed-Chr10:36235088 2.90E-80 dispersed
Sed10g1170 Sed-Chr10:19044097 Sed10g1950 Sed-Chr10:36226829 2.90E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39779 PF00412 LIM 1.00E-12 CL0167 Sed TF