Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1173 ATGCTGTGCGCTTGTTCAGGTGAGCAATTCAAGTTTGAAGAGCCACCACAGTCCCCAGAATCACTTGCTACGAGGGATTTCTCAACCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTGAGAGAAGCCCTCTCATTGAACTACGAGGAAGCCAGAGCTTTGCTGGGGAGGCTCGAGTATCAAAGAGGAAATTTTGATGCTGCCCTGCAGGTATTTCAAGGTATAGACATTAGATCCTTAACGCCAAGAATGATTAAGGCCATAGCTGAAAAGATAAGGGAGGAAAAATCTCGTCCTAAAGGGGATAGTGCACCCCCTTGCGGTGTAATGTCCATGCACTCTGTCAGTCTACTGCTTGAAGCAATTTTACTCAAGGCAAAATCATTGGAGGAACTTGGCAGATATACAGATTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAGTGGAATGCCCGAGTGCATTGGCGAAGACTGCAAACTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTACCTACTTTGTGGATTAAGGGAGGGTATCTCGACGAGGCTATAAATGCCTATCGCAGGGTCCTTGTTAAGCCATGGAATTTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGCACATTACTCTATGGCGGTGTTGAAGCAAGCCTTCCCCTAAAGTTTCATGTCTTTGGTCCAAGAATGCCGAAAAACAATGTAGAAGAAGCAATCCTTTTGTTGCTGATACTCATGAGGAAAGTGGTGATGCAGGAAATAAATTGGGATCCTGAGATTATGAATCACCTGACTTATGCACTTTCTATCACTGGACAATTTGAATTACTCGCTGAGCTTGTGGAGCAGATCCTACCTGGCATATATAGGCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAATGCAGCAGGACAGAGTGAAACAGCATTGAACCTTCTAACAAAAGCTTGTGGTTCCTCCTCTGAAGTAAAGCACAAGCCTCATCTTCATTCTTTTTTGTTGCTTTCTAAATTGTGTTCCGAGGATACAAAATATGCCCGTGATGGAATTAAATTTGCCCGTAGAATTATAGATATGGCCAAGGAACAAAGTAAACATTTCAAATCTGAAGCCCACAAGTTTTTAGGTGTTTGTTATGGAAATGCAGCAAGAGCTTCTGTATCCGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCTCTACGTGTTTCTTCTCTCAGTGGGAGGTATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCATGATGTTGCCTTGTACAGTGCAATGACATATTCAAATATGGTGGCGGATGGTTCTGGAAGAGGTTGGAAGCTTTTGACTCTCATACTTTCAGCTGAGAGGCGGCTCAAGGACGCCGAAACTATAGTTGACTTTGCCTTGGATGAAGTGGAGAGGATGGACCAACTGGATTTTCTTCGATTGAAAGCTGTACTCAAAATTACTCAAGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCCTGCTGGCTCTAATTCAAGCACGAGAAGAACTTCAGCTTCAGGCAAATAACTGTGACCAATCTAAGGACTTGGAACTGGAGGCAGCGGCAGAACGGAACTTGAAGCGGGCAGTCTGGCAGGATTTGGCTGCCACATATTCAAAACTTGCTTCCTGGGGGGATGCCGAGATTTGTCTGAATAAAGCCAAGTCATTAGATGTTCATTGCCCTAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGGTCGGTCATTACACAAGGAAGCCCTGGTTTCATTCTCAGTCTCTCTTTCGATCGATGCTGATTATGTTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATCCAGTAACCAAGCACTTCCGATTGCACGCAGCTTGCTGATGAATGCTGTGAGATTGGATCCTACAAGCCATGAAGCATGGCTCAACCTTGGAGTGCTCTCCAAAATGGAAGGTCAATTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTTCAACTATCAGCTCCTCCTCAGAGCTTCATCTGA 2154 43.5 MLCACSGEQFKFEEPPQSPESLATRDFSTSCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMIKAIAEKIREEKSRPKGDSAPPCGVMSMHSVSLLLEAILLKAKSLEELGRYTDSAKECRIILDTVESALPSGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRMPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITGQFELLAELVEQILPGIYRRAERWYFLALCYNAAGQSETALNLLTKACGSSSEVKHKPHLHSFLLLSKLCSEDTKYARDGIKFARRIIDMAKEQSKHFKSEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLSGRYDPEVMFNISLENAVQRNHDVALYSAMTYSNMVADGSGRGWKLLTLILSAERRLKDAETIVDFALDEVERMDQLDFLRLKAVLKITQEQPKQAIETYRILLALIQAREELQLQANNCDQSKDLELEAAAERNLKRAVWQDLAATYSKLASWGDAEICLNKAKSLDVHCPRGWHTTGKYFEGRSLHKEALVSFSVSLSIDADYVPSIISTAEVLMKSSNQALPIARSLLMNAVRLDPTSHEAWLNLGVLSKMEGQLLQAADFFQAAHELQLSAPPQSFI 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19086778 19090460 - Sed0019037.1 Sed10g1173 727677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1173 717 Gene3D Tetratricopeptide repeat domain 548 712 IPR011990 GO:0005515(InterPro)
Sed10g1173 717 SMART tpr_5 513 546 IPR019734 GO:0005515(InterPro)
Sed10g1173 717 SMART tpr_5 678 711 IPR019734 GO:0005515(InterPro)
Sed10g1173 717 SMART tpr_5 574 607 IPR019734 GO:0005515(InterPro)
Sed10g1173 717 SMART tpr_5 608 641 IPR019734 GO:0005515(InterPro)
Sed10g1173 717 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Sed10g1173 717 Gene3D Tetratricopeptide repeat domain 255 547 IPR011990 GO:0005515(InterPro)
Sed10g1173 717 SUPERFAMILY TPR-like 318 708 IPR011990 GO:0005515(InterPro)
Sed10g1173 717 SUPERFAMILY TPR-like 136 344 IPR011990 GO:0005515(InterPro)
Sed10g1173 717 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Sed10g1173 717 Gene3D Tetratricopeptide repeat domain 35 243 IPR011990 GO:0005515(InterPro)
Sed10g1173 717 SUPERFAMILY TPR-like 318 548 IPR011990 GO:0005515(InterPro)
Sed10g1173 717 Coils Coil 486 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1106 Sed-Chr6:30233045 Sed10g1173 Sed-Chr10:19086778 2.80E-94 dispersed
Sed06g1108 Sed-Chr6:30650843 Sed10g1173 Sed-Chr10:19086778 2.90E-69 dispersed
Sed10g1173 Sed-Chr10:19086778 Sed10g1175 Sed-Chr10:19086778 0.00E+00 dispersed
Sed10g1173 Sed-Chr10:19086778 Sed10g1174 Sed-Chr10:19086778 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1173 K21843 - csv:101209448 1265.75