Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1176 ATGCTGTGCGCTTGTTCAGGTGAGCAATTCAAGTTTGAAGAGCCACCACAGTCCCCAGAATCACTTGCTACGAGGGATTTCTCAACCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTGAGAGAAGCCCTCTCATTGAACTACGAGGAAGCCAGAGCTTTGCTGGGGAGGCTCGAGTATCAAAGAGGAAATTTTGATGCTGCCCTGCAGGTATTTCAAGGTATAGACATTAGATCCTTAACGCCAAGAATGATTAAGGCCATAGCTGAAAAGATAAGGGAGGAAAAATCTCGTCCTAAAGGGGATAGTGCACCCCCTTGCGGTGTAATGTCCATGCACTCTGTCAGTCTACTGCTTGAAGCAATTTTACTCAAGGCAAAATCATTGGAGGAACTTGGCAGATATACAGATTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAGTGGAATGCCCGAGTGCATTGGCGAAGACTGCAAACTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTACCTACTTTGTGGATTAAGGGAGGGTATCTCGACGAGGCTATAAATGCCTATCGCAGGGTCCTTGTTAAGCCATGGAATTTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGCACATTACTCTATGGCGGTGTTGAAGCAAGCCTTCCCCTAAAGTTTCATGTCTTTGGTCCAAGAATGCCGAAAAACAATGTAGAAGAAGCAATCCTTTTGTTGCTGATACTCATGAGGAAAGTGGTGATGCAGGAAATAAATTGGGATCCTGAGATTATGAATCACCTGACTTATGCACTTTCTATCACTGGACAATTTGAATTACTCGCTGAGCTTGTGGAGCAGATCCTACCTGGCATATATAGGCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAATGCAGCAGGACAGAGTGAAACAGCATTGAACCTTCTAACAAAAGCTTGTGGTTCCTCCTCTGAAGTAAAGCACAAGCCTCATCTTCATTCTTTTTTGTTGCTTTCTAAATTGTGTTCCGAGGATACAAAATATGCCCGTGATGGAATTAAATTTGCCCGTAGAATTATAGATATGGCCAAGGAACAAAGTAAACATTTCAAATCTGAAGCCCACAAGTTTTTAGGTGTTTGTTATGGAAATGCAGCAAGAGCTTCTGTATCCGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCTCTACGTGTTTCTTCTCTCAGTGGGAGGTATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCATGATGTTGCCTTGTACAGTGCAATGACATATTCAAATATGGTGGCGGATGGTTCTGGAAGAGGTTGGAAGCTTTTGACTCTCATACTTTCAGCTGAGAGGCGGCTCAAGGACGCCGAAACTATAGTTGACTTTGCCTTGGATGAAGTGGAGAGGATGGACCAACTGGATTTTCTTCGATTGAAAGCTGTACTCAAAATTACTCAAGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCCTGCTGGCTCTAATTCAAGCACGAGAAGAACTTCAGCTTCAGGCAAATAACTGTGACCAATCTAAGGACTTGGAACTGGAGGTTTTCCCCACCCTTATATTGCTGGTTTCTATCTTATGCTTGTCCACTCCATGA 1749 42.77 MLCACSGEQFKFEEPPQSPESLATRDFSTSCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMIKAIAEKIREEKSRPKGDSAPPCGVMSMHSVSLLLEAILLKAKSLEELGRYTDSAKECRIILDTVESALPSGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRMPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITGQFELLAELVEQILPGIYRRAERWYFLALCYNAAGQSETALNLLTKACGSSSEVKHKPHLHSFLLLSKLCSEDTKYARDGIKFARRIIDMAKEQSKHFKSEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLSGRYDPEVMFNISLENAVQRNHDVALYSAMTYSNMVADGSGRGWKLLTLILSAERRLKDAETIVDFALDEVERMDQLDFLRLKAVLKITQEQPKQAIETYRILLALIQAREELQLQANNCDQSKDLELEVFPTLILLVSILCLSTP 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19086778 19090460 - Sed0019037.4 Sed10g1176 727680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1176 582 SUPERFAMILY TPR-like 318 547 IPR011990 GO:0005515(InterPro)
Sed10g1176 582 Gene3D Tetratricopeptide repeat domain 255 562 IPR011990 GO:0005515(InterPro)
Sed10g1176 582 Gene3D Tetratricopeptide repeat domain 35 244 IPR011990 GO:0005515(InterPro)
Sed10g1176 582 PANTHER PROTEIN NPG1 1 569 IPR043376 -
Sed10g1176 582 Coils Coil 486 506 - -
Sed10g1176 582 SUPERFAMILY TPR-like 46 342 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1174 Sed-Chr10:19086778 Sed10g1176 Sed-Chr10:19086778 0.00E+00 dispersed
Sed10g1175 Sed-Chr10:19086778 Sed10g1176 Sed-Chr10:19086778 0.00E+00 tandem
Sed10g1176 Sed-Chr10:19086778 Sed10g1177 Sed-Chr10:19086778 1.10E-236 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1176 K21843 - csv:101209448 996.882