Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1177 ATGATTGTTACCAAGATAAACAGTGCAATATACATCATTCTTGCGTTTCTTATGTTTGGCTGTCTGGTAGTGCGATTGATCCCAATTCTTTCGTGTTCATTAGATTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAGTGGAATGCCCGAGTGCATTGGCGAAGACTGCAAACTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTACCTACTTTGTGGATTAAGGGAGGGTATCTCGACGAGGCTATAAATGCCTATCGCAGGGTCCTTGTTAAGCCATGGAATTTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGCACATTACTCTATGGCGGTGTTGAAGCAAGCCTTCCCCTAAAGTTTCATGTCTTTGGTCCAAGAATGCCGAAAAACAATGTAGAAGAAGCAATCCTTTTGTTGCTGATACTCATGAGGAAAGTGGTGATGCAGGAAATAAATTGGGATCCTGAGATTATGAATCACCTGACTTATGCACTTTCTATCACTGGACAATTTGAATTACTCGCTGAGCTTGTGGAGCAGATCCTACCTGGCATATATAGGCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAATGCAGCAGGACAGAGTGAAACAGCATTGAACCTTCTAACAAAAGCTTGTGGTTCCTCCTCTGAAGTAAAGCACAAGCCTCATCTTCATTCTTTTTTGTTGCTTTCTAAATTGTGTTCCGAGGATACAAAATATGCCCGTGATGGAATTAAATTTGCCCGTAGAATTATAGATATGGCCAAGGAACAAAGTAAACATTTCAAATCTGAAGCCCACAAGTTTTTAGGTGTTTGTTATGGAAATGCAGCAAGAGCTTCTGTATCCGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCTCTACGTGTTTCTTCTCTCAGTGGGAGGTATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCATGATGTTGCCTTGTACAGTGCAATGACATATTCAAATATGGTGGCGGATGGTTCTGGAAGAGGTTGGAAGCTTTTGACTCTCATACTTTCAGCTGAGAGGCGGCTCAAGGACGCCGAAACTATAGTTGACTTTGCCTTGGATGAAGTGGAGAGGATGGACCAACTGGATTTTCTTCGATTGAAAGCTGTACTCAAAATTACTCAAGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCCTGCTGGCTCTAATTCAAGCACGAGAAGAACTTCAGCTTCAGGCAAATAACTGTGACCAATCTAAGGACTTGGAACTGGAGGCAGCGGCAGAACGGAACTTGAAGCGGGCAGTCTGGCAGGATTTGGCTGCCACATATTCAAAACTTGCTTCCTGGGGGGATGCCGAGATTTGTCTGAATAAAGCCAAGTCATTAGATGTTCATTGCCCTAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGGTCGGTCATTACACAAGGAAGCCCTGGTTTCATTCTCAGTCTCTCTTTCGATCGATGCTGATTATGTTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATCCAGTAACCAAGCACTTCCGATTGCACGCAGCTTGCTGATGAATGCTGTGAGATTGGATCCTACAAGCCATGAAGCATGGCTCAACCTTGGAGTGCTCTCCAAAATGGAAGGTCAATTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTTCAACTATCAGCTCCTCCTCAGAGCTTCATCTGA 1803 42.82 MIVTKINSAIYIILAFLMFGCLVVRLIPILSCSLDSAKECRIILDTVESALPSGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRMPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITGQFELLAELVEQILPGIYRRAERWYFLALCYNAAGQSETALNLLTKACGSSSEVKHKPHLHSFLLLSKLCSEDTKYARDGIKFARRIIDMAKEQSKHFKSEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLSGRYDPEVMFNISLENAVQRNHDVALYSAMTYSNMVADGSGRGWKLLTLILSAERRLKDAETIVDFALDEVERMDQLDFLRLKAVLKITQEQPKQAIETYRILLALIQAREELQLQANNCDQSKDLELEAAAERNLKRAVWQDLAATYSKLASWGDAEICLNKAKSLDVHCPRGWHTTGKYFEGRSLHKEALVSFSVSLSIDADYVPSIISTAEVLMKSSNQALPIARSLLMNAVRLDPTSHEAWLNLGVLSKMEGQLLQAADFFQAAHELQLSAPPQSFI 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19086778 19090460 - Sed0019037.5 Sed10g1177 727681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1177 600 Gene3D Tetratricopeptide repeat domain 363 596 IPR011990 GO:0005515(InterPro)
Sed10g1177 600 SUPERFAMILY TPR-like 397 591 IPR011990 GO:0005515(InterPro)
Sed10g1177 600 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Sed10g1177 600 SUPERFAMILY TPR-like 201 425 IPR011990 GO:0005515(InterPro)
Sed10g1177 600 SMART tpr_5 201 234 IPR019734 GO:0005515(InterPro)
Sed10g1177 600 SMART tpr_5 396 429 IPR019734 GO:0005515(InterPro)
Sed10g1177 600 SMART tpr_5 561 594 IPR019734 GO:0005515(InterPro)
Sed10g1177 600 SMART tpr_5 491 524 IPR019734 GO:0005515(InterPro)
Sed10g1177 600 SMART tpr_5 457 490 IPR019734 GO:0005515(InterPro)
Sed10g1177 600 Gene3D Tetratricopeptide repeat domain 60 302 IPR011990 GO:0005515(InterPro)
Sed10g1177 600 PANTHER PROTEIN NPG1 34 599 IPR043376 -
Sed10g1177 600 Coils Coil 369 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1175 Sed-Chr10:19086778 Sed10g1177 Sed-Chr10:19086778 0.00E+00 dispersed
Sed10g1176 Sed-Chr10:19086778 Sed10g1177 Sed-Chr10:19086778 1.10E-236 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1177 K21843 - csv:101209448 991.49