Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed10g1197 ATGGCTGGCGTCCCCCTCTCGGGTGGTGAGGAGAATGTTTACATGGCCAAGCTCTCGGAGCAGGCCGAGCGCTACGAGGAGATGGTGGAGTTCATGGAAAAGGTTTCCGGTTCCATAGACAAGGAGGAGCTGAGCGTGGAGGAGAGAAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCACGCAGGGCCTCCTGGCGTATCATTTCCTCCATCGAGCAGAAGGAGGAGACCCGAGGCAACGCTGACCATGTCTCTGTCATCCGTGACTACAGATCCAAAATTGAGACCGAGCTCTCCAATATCTGCTACGGAATCCTCAAACTCCTCGACTCCAGACTCATACCCTCCGCAGCTTCTGGAGATTCCAGGGTCTTTTACCTTAAAATGAAGGGCGATTACCACAGATACCTTGCCGAGTTCAAAACCGGCGCCCAAAGGAAGGAAGCTGCCGAAAGTACTCTCACTGCTTACAAAGCCGCTCAGGAGATCGCAAACGCTGAGTTGCCTCCTACACATCCCATCCGACTTGGATTGGCCCTTAACTTCTCTGTATTCTACTATGAAATTTTGAATTCACCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCCATCGCTGAGCTGGATACCCTCGGGGAAGAATCCTACAAGGATAGTACTTTGATAATGCAACTTCTCCGTGACAACCTCACTCTTTGGACCTCGGACATGCAGGATGATAGTGCGGATGAGATTAAAGAAGCTCCCTCCAAGCGTGATGATGAGAAGCAGTGA 789 51.84 MAGVPLSGGEENVYMAKLSEQAERYEEMVEFMEKVSGSIDKEELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEETRGNADHVSVIRDYRSKIETELSNICYGILKLLDSRLIPSAASGDSRVFYLKMKGDYHRYLAEFKTGAQRKEAAESTLTAYKAAQEIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDSADEIKEAPSKRDDEKQ 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21811597 21813154 - Sed0014554.1 Sed10g1197 727701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed10g1197 262 SUPERFAMILY 14-3-3 protein 10 241 IPR036815 -
Sed10g1197 262 MobiDBLite consensus disorder prediction 242 262 - -
Sed10g1197 262 PANTHER 14-3-3 PROTEIN 10 244 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed10g1197 262 Pfam 14-3-3 protein 15 239 IPR023410 -
Sed10g1197 262 SMART 1433_4 10 252 IPR023410 -
Sed10g1197 262 PIRSF 14-3-3 6 251 IPR000308 -
Sed10g1197 262 MobiDBLite consensus disorder prediction 244 262 - -
Sed10g1197 262 Coils Coil 15 35 - -
Sed10g1197 262 Gene3D - 6 252 IPR036815 -
Sed10g1197 262 FunFam 14-3-3 protein epsilon 6 252 - -
Sed10g1197 262 PRINTS 14-3-3 protein zeta signature 185 211 IPR000308 -
Sed10g1197 262 PRINTS 14-3-3 protein zeta signature 43 72 IPR000308 -
Sed10g1197 262 PRINTS 14-3-3 protein zeta signature 123 145 IPR000308 -
Sed10g1197 262 PRINTS 14-3-3 protein zeta signature 158 184 IPR000308 -
Sed10g1197 262 PRINTS 14-3-3 protein zeta signature 92 116 IPR000308 -
Sed10g1197 262 PRINTS 14-3-3 protein zeta signature 212 241 IPR000308 -
Sed10g1197 262 ProSitePatterns 14-3-3 proteins signature 1. 49 59 IPR023409 -
Sed10g1197 262 ProSitePatterns 14-3-3 proteins signature 2. 221 240 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1594 Sed-Chr5:29693563 Sed10g1197 Sed-Chr10:21811597 1.40E-119 dispersed
Sed10g1197 Sed-Chr10:21811597 Sed13g2141 Sed-Chr13:26046387 2.20E-120 dispersed
Sed10g1197 Sed-Chr10:21811597 Sed04g0158 Sed-Chr4:1074549 7.20E-127 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed10g1197 K06630 - csv:101220164 472.626